Evidence map›Paper›PMID 34759956›Full record

ArticleFrontiers in genetics2021

Identification of Non-Canonical Translation Products in

Bhavesh S Parmar, Marlies K R Peeters, Kurt Boonen, Ellie C Clark, Geert Baggerman, Gerben Menschaert, Liesbet Temmerman

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Peptidomics.Nature reviews. Methods primers · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Bhavesh S ParmarAnimal Physiology and Neurobiology, University of Leuven (KU Leuven), Leuven, Belgium.
Marlies K R PeetersLaboratory of Bioinformatics and Computational Genomics (BioBix), Department of Mathematical Modelling, Ghent University, Ghent, Belgium.
Kurt BoonenCentre for Proteomics (CFP), University of Antwerp, Antwerp, Belgium.
Ellie C ClarkAnimal Physiology and Neurobiology, University of Leuven (KU Leuven), Leuven, Belgium.
Geert BaggermanCentre for Proteomics (CFP), University of Antwerp, Antwerp, Belgium.
Gerben MenschaertLaboratory of Bioinformatics and Computational Genomics (BioBix), Department of Mathematical Modelling, Ghent University, Ghent, Belgium.
Liesbet TemmermanAnimal Physiology and Neurobiology, University of Leuven (KU Leuven), Leuven, Belgium.
KU Leuven · BEGhent University · BEUniversity of Antwerp · BE

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
NIH HHS P40 OD010440
6 · The paper itself

Abstract

Transcriptome and ribosome sequencing have revealed the existence of many non-canonical transcripts, mainly containing splice variants, ncRNA, sORFs and altORFs. However, identification and characterization of products that may be translated out of these remains a challenge. Addressing this, we here report on 552 non-canonical proteins and splice variants in the model organism

Indexed as

altORFsC. elegansLC-MS/MSmass spectrometryMSFraggerPEAKSsORFstimsTOF

Identifiers

PMID34759956
PMCPMC8575065
OpenAlexW3210604227

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.