Evidence map›Paper›PMID 34758862›Full record

ArticleVirology journal2021

Evolutionary genomics of APSE: a tailed phage that lysogenically converts the bacterium Hamiltonella defensa into a heritable protective symbiont of aphids.

Bret M Boyd, Germain Chevignon, Vilas Patel, Kerry M Oliver, Michael R Strand

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Article in Virology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. CarryingInsects · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Flies co-opt bacterial toxins for use in defense against parasitoids.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Evolution of insect innate immunity through domestication of bacterial toxins.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Parasitization ofInsects · 2023
    Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Evolution in small steps and giant leaps.Evolution; international journal of organic evolution · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Bret M BoydDepartment of Entomology, University of Georgia Athens, Athens, GA, USA. boydbm@vcu.edu.
Germain ChevignonLaboratoire de Génétique et Pathologie des Mollusques Marins, IFREMER, La Tremblade, France.
Vilas PatelDepartment of Entomology, University of Georgia Athens, Athens, GA, USA.
Kerry M OliverDepartment of Entomology, University of Georgia Athens, Athens, GA, USA.
Michael R StrandDepartment of Entomology, University of Georgia Athens, Athens, GA, USA. mrstrand@uga.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMost phages infect free-living bacteria but a few have been identified that infect heritable symbionts of insects or other eukaryotes. Heritable symbionts are usually specialized and isolated from other bacteria with little known about the origins of associated phages. Hamiltonella defensa is a heritable bacterial symbiont of aphids that is usually infected by a tailed, double-stranded DNA phage named APSE.

methodsWe conducted comparative genomic and phylogenetic studies to determine how APSE is related to other phages and prophages.

resultsEach APSE genome was organized into four modules and two predicted functional units. Gene content and order were near-fully conserved in modules 1 and 2, which encode predicted DNA metabolism genes, and module 4, which encodes predicted virion assembly genes. Gene content of module 3, which contains predicted toxin, holin and lysozyme genes differed among haplotypes. Comparisons to other sequenced phages suggested APSE genomes are mosaics with modules 1 and 2 sharing similarities with Bordetella-Bcep-Xylostella fastidiosa-like podoviruses, module 4 sharing similarities with P22-like podoviruses, and module 3 sharing no similarities with known phages. Comparisons to other sequenced bacterial genomes identified APSE-like elements in other heritable insect symbionts (Arsenophonus spp.) and enteric bacteria in the family Morganellaceae.

conclusionsAPSEs are most closely related to phage elements in the genus Arsenophonus and other bacteria in the Morganellaceae.

Indexed as

AphidsBacteriophagesAnimalsEnterobacteriaceaeGenomicsPhylogenySymbiosisAphidBacteriaMutualismParasitoidVirus

Identifiers

PMID34758862
PMCPMC8579659

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.