Evidence map›Paper›PMID 34758315›Full record

ArticleCell reports2021

Klf5 establishes bi-potential cell fate by dual regulation of ICM and TE specification genes.

Martin Kinisu, Yong Jin Choi, Claudia Cattoglio, Ke Liu, Hector Roux de Bezieux, Raeline Valbuena, Nicole Pum, Sandrine Dudoit, Haiyan Huang, Zhenyu Xuan and 2 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 38 citations in OpenAlex.

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  16. Activation of the YAP/KLF5 transcriptional cascade in renal tubular cells aggravates kidney injury.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Martin KinisuDivision of Cellular and Developmental Biology, MCB Department, University of California, Berkeley, Berkeley, CA 94705, USA.
Yong Jin ChoiDivision of Cellular and Developmental Biology, MCB Department, University of California, Berkeley, Berkeley, CA 94705, USA.
Claudia CattoglioDivision of Cellular and Developmental Biology, MCB Department, University of California, Berkeley, Berkeley, CA 94705, USA; Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, CA 94720, USA.
Ke LiuDepartment of Statistics, University of California, Berkeley, Berkeley, CA 94720, USA.
Hector Roux de BezieuxDivision of Biostatistics, School of Public Health, University of California, Berkeley, Berkeley, CA 94720, USA.
Raeline ValbuenaDivision of Cellular and Developmental Biology, MCB Department, University of California, Berkeley, Berkeley, CA 94705, USA.
Nicole PumDivision of Cellular and Developmental Biology, MCB Department, University of California, Berkeley, Berkeley, CA 94705, USA.
Sandrine DudoitDivision of Biostatistics, School of Public Health, University of California, Berkeley, Berkeley, CA 94720, USA.
Haiyan HuangDepartment of Statistics, University of California, Berkeley, Berkeley, CA 94720, USA.
Zhenyu XuanDepartment of Molecular and Cell Biology, University of Texas at Dallas, 800 West Campbell Road, Richardson, TX 75080, USA.
Sang Yong KimDepartment of Pathology, NYU Grossman School of Medicine, 540 First Avenue, New York, NY 10016, USA.
Lin HeDivision of Cellular and Developmental Biology, MCB Department, University of California, Berkeley, Berkeley, CA 94705, USA. Electronic address: lhe@berkeley.edu.
University of California, Berkeley · USHoward Hughes Medical Institute · USNew York University · USThe University of Texas at Dallas · US

Funding

Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
miR-200 miRNAs regulate motile ciliogenesis in respiratory epitheliaR21HD088885 · NICHD · UNIVERSITY OF CALIFORNIA BERKELEY · PI HE, LIN · 2017 to 2018
$432k
miR-34/449 miRNAs regulate ciliogenesis and cerebrospinal fluid production in choroid plexusR21NS099761 · NINDS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HE, LIN · 2016 to 2017
$432k
Rapid Fluorescent Tagging of Endogenous Proteins in Mouse ModelsR21OD027053 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI HE, LIN · 2019 to 2020
$393k
A new technology to isolate RNP complexes of a polycistronic miRNA oncogeneR21CA175560 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI HE, LIN · 2013 to 2014
$360k
Howard Hughes Medical InstituteNCI NIH HHS R21 CA175560NICHD NIH HHS R21 HD088885NIH HHS R21 OD027053NIH HHS S10 OD018174NINDS NIH HHS R21 NS099761
6 · The paper itself

Abstract

Early blastomeres of mouse preimplantation embryos exhibit bi-potential cell fate, capable of generating both embryonic and extra-embryonic lineages in blastocysts. Here we identify three major two-cell-stage (2C)-specific endogenous retroviruses (ERVs) as the molecular hallmark of this bi-potential plasticity. Using the long terminal repeats (LTRs) of all three 2C-specific ERVs, we identify Krüppel-like factor 5 (Klf5) as their major upstream regulator. Klf5 is essential for bi-potential cell fate; a single Klf5-overexpressing embryonic stem cell (ESC) generates terminally differentiated embryonic and extra-embryonic lineages in chimeric embryos, and Klf5 directly induces inner cell mass (ICM) and trophectoderm (TE) specification genes. Intriguingly, Klf5 and Klf4 act redundantly during ICM specification, whereas Klf5 deficiency alone impairs TE specification. Klf5 is regulated by multiple 2C-specific transcription factors, particularly Dux, and the Dux/Klf5 axis is evolutionarily conserved. The 2C-specific transcription program converges on Klf5 to establish bi-potential cell fate, enabling a cell state with dual activation of ICM and TE genes.

Indexed as

BlastocystCell LineageGene Expression Regulation, DevelopmentalAnimalsBlastocyst Inner Cell MassCell DifferentiationEmbryonic Stem CellsFemaleKruppel-Like Transcription FactorsMaleMiceMice, Inbred C3HMice, Inbred C57BLRNA-SeqTranscription FactorsTrophoblastsKlf5 protein, mouseKruppel-Like Transcription FactorsTranscription FactorsICMKlf4Klf5MERVLORR1A0ORR1A1preimplantation developmentTE

Identifiers

PMID34758315
PMCPMC8711565
OpenAlexW3214294361

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.