Evidence map›Paper›PMID 34757831›Full record

ArticleJournal of clinical microbiology2022

Comparative Performance of Genomic Methods for the Detection of Pyrazinamide Resistance and Heteroresistance in Mycobacterium tuberculosis.

Michael G Whitfield, David M Engelthaler, Christopher Allender, Megan Folkerts, Tim H Heupink, Jason Limberis, Robin M Warren, Annelies Van Rie, John Z Metcalfe

Open access · hybridAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 2 pooled it
1.0field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 2 syntheses or guidelines pooled it, 19 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Michael G WhitfieldNational Institute for Health Research, Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, Imperial College Londongrid.7445.2, London, UK.ORCID 0000-0002-5956-8384
David M EngelthalerTranslational Genomics Research Institutegrid.250942.8, Flagstaff, Arizona, USA.ORCID 0000-0001-5945-059X
Christopher AllenderTranslational Genomics Research Institutegrid.250942.8, Flagstaff, Arizona, USA.
Megan FolkertsTranslational Genomics Research Institutegrid.250942.8, Flagstaff, Arizona, USA.
Tim H HeupinkFamily Medicine and Population Health (FAMPOP), Faculty of Medicine and Health Sciences, University of Antwerpgrid.5284.b, Antwerp, Belgium.
Jason LimberisUniversity of California San Francisco, San Francisco, California, USA.
Robin M WarrenSouth African Medical Research Council Centre for Tuberculosis Research/DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Stellenbosch Universitygrid.11956.3a, South Africa.
Annelies Van Rie *Family Medicine and Population Health (FAMPOP), Faculty of Medicine and Health Sciences, University of Antwerpgrid.5284.b, Antwerp, Belgium.
John Z Metcalfe *University of California San Francisco, San Francisco, California, USA.
Translational Genomics Research Institute · USSouth African Medical Research Council · ZAUniversity of Antwerp · BEUniversity of California, San Francisco · US

Funding

Novel next-generation sequencing assay for monitoring multidrug resistant tuberculosis treatment in the setting of HIV infectionR01AI131939 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ENGELTHALER, DAVID M, METCALFE, JOHN ZAPATA · 2018 to 2023
$3.9M
Optimizing the impact of Xpert MTB/RIF on treatment outcomes of drug resistant TBR01AI099026 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI VAN RIE, ANNELIES T.A. · 2012 to 2014
$1.6M
Department of HealthNIAID NIH HHS R01 AI099026NIAID NIH HHS R01 AI131939
6 · The paper itself

Abstract

Pyrazinamide is an important component of both drug-susceptible and drug-resistant tuberculosis treatment regimens. Although approximately 50% of rifampin-resistant isolates are also resistant to pyrazinamide, pyrazinamide susceptibility testing is not routinely performed due to the challenging nature of the assay. We investigated the diagnostic accuracy of genotypic and phenotypic methods and explored the occurrence of pyrazinamide heteroresistance. We assessed pyrazinamide susceptibility among 358 individuals enrolled in the South African EXIT-RIF cohort using Sanger and targeted deep sequencing (TDS) of the

Indexed as

Mycobacterium tuberculosisTuberculosis, Multidrug-ResistantAmidohydrolasesAntitubercular AgentsGenomicsHumansMicrobial Sensitivity TestsMutationPyrazinamideAmidohydrolasesAntitubercular AgentsPyrazinamideMycobacterium tuberculosispncApyrazinamideresistancesequencing

Identifiers

PMID34757831
PMCPMC8769725
OpenAlexW3212829969

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.