Evidence map›Paper›PMID 34757798›Full record

ArticleScience advances2021

Phase transition specified by a binary code patterns the vertebrate eye cup.

Revathi Balasubramanian, Xuanyu Min, Peter M J Quinn, Quentin Lo Giudice, Chenqi Tao, Karina Polanco, Neoklis Makrides, John Peregrin, Michael Bouaziz, Yingyu Mao and 8 more

Abstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Development of the Binocular Circuit.Annual review of neuroscience · 2024
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Revathi BalasubramanianDepartment of Ophthalmology, Columbia University, New York, NY, USA.ORCID 0000-0002-2209-0815
Xuanyu MinDepartment of Ophthalmology, Columbia University, New York, NY, USA.ORCID 0000-0002-9742-1973
Peter M J QuinnDepartment of Ophthalmology, Columbia University, New York, NY, USA.ORCID 0000-0001-9940-4264
Quentin Lo GiudiceDepartment of Basic Neurosciences, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-4225-0628
Chenqi TaoDepartment of Ophthalmology, Columbia University, New York, NY, USA.ORCID 0000-0002-4346-7343
Karina PolancoDepartment of Psychology, Columbia University, New York, NY, USA.
Neoklis MakridesDepartment of Ophthalmology, Columbia University, New York, NY, USA.
John PeregrinDepartment of Ophthalmology, Columbia University, New York, NY, USA.ORCID 0000-0001-6174-7026
Michael BouazizDepartment of Ophthalmology, Columbia University, New York, NY, USA.ORCID 0000-0001-6611-4973
Yingyu MaoDepartment of Ophthalmology, Columbia University, New York, NY, USA.
Qian WangDepartment of Ophthalmology, Columbia University, New York, NY, USA.ORCID 0000-0002-6166-3081
Bruna L da CostaDepartment of Ophthalmology, Columbia University, New York, NY, USA.ORCID 0000-0002-6513-0717
Diego BuenaventuraDepartment of Biology, The City College of New York, New York, NY, USA.
Fen WangCenter for Cancer Biology and Nutrition, Institute of Biosciences and Technology, Texas A&M, Houston, TX, USA.ORCID 0000-0001-7800-9222
Liang MaDivision of Dermatology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.
Stephen H TsangDepartment of Ophthalmology, Columbia University, New York, NY, USA.
Pierre J FabreDepartment of Basic Neurosciences, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-5936-8120
Xin ZhangDepartment of Ophthalmology, Columbia University, New York, NY, USA.ORCID 0000-0001-5555-0825

Funding

Instrumentation, Fabrication, and Design CoreP30EY019007 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Xin Zhang · 2010 to 2026
$12.9M
Therapeutic gene editing and multimodal imaging in juvenile macular degeneration R24EY028758 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI AUDO , ISABELLE, SPARROW, JANET RUTHE · 2020 to 2024
$10.9M
The Jackson Laboratory Center for Precision Genetics: From New Models to Novel TherapeuticsU54OD020351 · OD · JACKSON LABORATORY · PI LUTZ, CATHLEEN M · 2015 to 2019
$10.2M
Signaling Mechanisms of Lens DevelopmentR01EY017061 · NEI · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI ZHANG, XIN · 2006 to 2025
$9.0M
Translational Gene Therapy for CNGB1 Retinitis PigmentosaR24EY027285 · NEI · MICHIGAN STATE UNIVERSITY · PI HAUSWIRTH, WILLIAM W, MICHALAKIS, STYLIANOS · 2018 to 2022
$8.6M
Toward mechanism- and gene-based therapies for retinal degenerationR01EY018213 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Stephen H Tsang · 2008 to 2026
$6.6M
Gene Silencing and Gene Editing in PhototransductionR01EY024698 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Stephen H Tsang · 2015 to 2026
$4.7M
PDGF signaling in lens developmentR01EY025933 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ZHANG, XIN · 2015 to 2023
$3.2M
Reprogramming the metabolome to overcome the genetic heterogeneity in retinitis pigmentosaR01EY031354 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WANG, NAN-KAI · 2020 to 2024
$2.0M
GENITALIA OUTGROWTH AND HYPOSPADIASR01DK113642 · NIDDK · WASHINGTON UNIVERSITY · PI MA, LIANG · 2017 to 2021
$1.7M
Retinoic acid signaling in decidualizationR01HD106120 · NICHD · WASHINGTON UNIVERSITY · PI MA, LIANG · 2021 to 2025
$1.7M
Mechanistic Studies on Regenerative Medicine Approaches to Childhood BlindnessR01EY026682 · NEI · UNIVERSITY OF IOWA · PI BASSUK, ALEXANDER G, MAHAJAN, VINIT B · 2016 to 2019
$1.6M
NEI NIH HHS K99 EY032171NEI NIH HHS P30 EY019007NEI NIH HHS R01 EY017061NEI NIH HHS R01 EY018213NEI NIH HHS R01 EY024698NEI NIH HHS R01 EY025933NEI NIH HHS R01 EY026682NEI NIH HHS R01 EY031354NEI NIH HHS R24 EY027285NEI NIH HHS R24 EY028758NEI NIH HHS U01 EY030580NIA NIH HHS R21 AG050437NICHD NIH HHS R01 HD106120NIDDK NIH HHS R01 DK113642NIH HHS U54 OD020351
6 · The paper itself

Abstract

The developing vertebrate eye cup is partitioned into the neural retina (NR), the retinal pigmented epithelium (RPE), and the ciliary margin (CM). By single-cell analysis, we showed that fibroblast growth factor (FGF) signaling regulates the CM in its stem cell–like property of self-renewal, differentiation, and survival, which is balanced by an evolutionarily conserved Wnt signaling gradient. FGF promotes Wnt signaling in the CM by stabilizing β-catenin in a GSK3β-independent manner. While Wnt signaling converts the NR to either the CM or the RPE depending on FGF signaling, FGF transforms the RPE to the NR or CM dependent on Wnt activity. The default fate of the eye cup is the NR, but synergistic FGF and Wnt signaling promotes CM formation both in vivo and in human retinal organoid. Our study reveals that the vertebrate eye develops through phase transition determined by a combinatorial code of FGF and Wnt signaling.

Identifiers

PMID34757798
PMCPMC8580326

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.