Evidence map›Paper›PMID 34757068›Full record

ArticleThe Journal of investigative dermatology2022

Transcriptome Analysis Reveals Intrinsic Proinflammatory Signaling in Healthy African American Skin.

Anna Klopot, Gleb Baida, Alexander Kel, Lam C Tsoi, Bethany E Perez White, Irina Budunova

Open access · greenAbstract read
In one paragraph

Article in The Journal of investigative dermatology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Skin as a Potential Entry Point for SARS-CoV-2 Virus.International journal of molecular sciences · 2026
    Article
  3. SKIN AS A POTENTIAL ENTRY POINT FOR SARS-COV-2.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Psoriasis in People With Skin of Color: An Evidence-Based Update.International journal of dermatology · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Anna KlopotDepartment of Dermatology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, USA.
Gleb BaidaDepartment of Dermatology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, USA.
Alexander KelgeneXplain GmbH, Wolfenbüttel, Germany; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Lam C TsoiDepartment of Dermatology, University of Michigan Medical School, Ann Arbor, Michigan, USA; Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, Michigan, USA; Department of Biostatistics, School of Public Health, University of Michigan, Ann Arbor, Michigan, USA.
Bethany E Perez WhiteDepartment of Dermatology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, USA.
Irina BudunovaDepartment of Dermatology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, USA. Electronic address: i-budunova@northwestern.edu.
Northwestern University · USInstitute of Chemical Biology and Fundamental Medicine · RUUniversity of Michigan · US

Funding

Northwestern University Clinical and Translational Science Institute (NUCATS)UL1TR001422 · NCATS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI D'AQUILA, RICHARD · 2015 to 2023
$56.8M
Northwestern University Skin Disease Research Center Resource-based CenterP30AR075049 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Amy S Paller · 2019 to 2026
$6.6M
The Role of Keratinocytes as Independent ThermosensorsP30AR057216 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI PEREZ WHITE, BETHANY E · 2009 to 2018
$6.0M
REDD1 dissociates the therapeutic and adverse effects of glucocorticoids in skinR01AI125366 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI BUDUNOVA, IRINA · 2017 to 2021
$2.4M
Integrative informatics approach to develop safe glucocorticoid therapiesR01GM112945 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI BUDUNOVA, IRINA, MA'AYAN, AVI · 2015 to 2018
$2.1M
Integrative Biology Approach to Identify and Characterize Roles of lncRNAs Associated with Psoriasis PathologyK01AR072129 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI TSOI, LAM CHEUNG · 2017 to 2021
$500k
Breaking down barriers: defining the role of EphA2 in building epidermal tight junctions in atopic dermatitisK01AR072773 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI PEREZ WHITE, BETHANY E · 2018 to 2021
$333k
NCATS NIH HHS UL1 TR001422NIAID NIH HHS R01 AI125366NIAMS NIH HHS K01 AR072129NIAMS NIH HHS K01 AR072773NIAMS NIH HHS L40 AR076139NIAMS NIH HHS P30 AR057216NIAMS NIH HHS P30 AR075049NIGMS NIH HHS R01 GM112945
6 · The paper itself

Abstract

Differences in the morphology and physiology of darkly pigmented skin compared with those of lightly pigmented skin are well-recognized. There are also disparities in the prevalence and clinical features for many inflammatory skin diseases, including atopic dermatitis and psoriasis; however, the underlying mechanisms are largely unknown. We compared the baseline gene expression in full-thickness skin biopsies from healthy individuals self-reporting as African American (AA) or as White non-Hispanic (WNH). Extensively validated RNA-sequencing analysis identified 570 differentially expressed genes in AA skin, including Igs and their receptors such as FCER1G; proinflammatory genes such as TNFα and IL32; and epidermal differentiation cluster and keratin genes. Differentially expressed genes were functionally enriched for inflammatory responses, keratinization, and cornified envelope formation. RNA-sequencing analysis of three-dimensional human skin equivalents made from AA and WNH primary keratinocytes revealed 360 differentially expressed genes (some shared with skin) that were enriched by similar functions. AA human skin equivalents appeared more responsive to TNF-α proinflammatory effects. Finally, AA-specific differentially expressed genes in the skin and human skin equivalents significantly overlapped with molecular signatures of skin in patients with atopic dermatitis and psoriasis. Overall, these findings suggest the existence of intrinsic proinflammatory circuits in AA keratinocytes/skin that may account for disease disparities and will help to build a foundation for the development of targeted skin disease prevention.

Indexed as

Dermatitis, AtopicPsoriasisBlack or African AmericanGene Expression ProfilingHumansKeratinocytesRNASkinTranscriptomeTumor Necrosis Factor-alphaRNATumor Necrosis Factor-alpha

Identifiers

PMID34757068
PMCPMC9038646
OpenAlexW3152904870

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.