Evidence map›Paper›PMID 34756891›Full record

ArticleThe Journal of biological chemistry2021

Fungal effector SIB1 of Colletotrichum orbiculare has unique structural features and can suppress plant immunity in Nicotiana benthamiana.

Ru Zhang, Noriyoshi Isozumi, Masashi Mori, Ryuta Okuta, Suthitar Singkaravanit-Ogawa, Tomohiro Imamura, Jun-Ichi Kurita, Pamela Gan, Ken Shirasu, Shinya Ohki and 1 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Differential gene expression in ripe mango fruit (Frontiers in fungal biology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Ru ZhangGraduate School of Agriculture, Kyoto University, Kyoto, Japan.
Noriyoshi IsozumiCenter for Nano Materials and Technology (CNMT), Japan Advanced Institute of Science and Technology (JAIST), Ishikawa, Japan.
Masashi MoriResearch Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Ishikawa, Japan. Electronic address: mori@ishikawa-pu.ac.jp.
Ryuta OkutaGraduate School of Agriculture, Kyoto University, Kyoto, Japan.
Suthitar Singkaravanit-OgawaGraduate School of Agriculture, Kyoto University, Kyoto, Japan.
Tomohiro ImamuraResearch Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Ishikawa, Japan.
Jun-Ichi KuritaGraduate School of Medical Life Science, Yokohama City University, Yokohama, Japan.
Pamela GanCenter for Sustainable Resource Science, RIKEN, Yokohama, Japan.
Ken ShirasuCenter for Sustainable Resource Science, RIKEN, Yokohama, Japan.
Shinya OhkiCenter for Nano Materials and Technology (CNMT), Japan Advanced Institute of Science and Technology (JAIST), Ishikawa, Japan. Electronic address: shinya-o@jaist.ac.jp.
Yoshitaka TakanoGraduate School of Agriculture, Kyoto University, Kyoto, Japan. Electronic address: takano.yoshitaka.2x@kyoto-u.ac.jp.
Kyoto University · JPIshikawa Prefectural University · JPJapan Advanced Institute of Science and Technology · JPRIKEN Center for Sustainable Resource Science · JPYokohama City University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fungal plant pathogens secrete virulence-related proteins, called effectors, to establish host infection; however, the details are not fully understood yet. Functional screening of effector candidates using Agrobacterium-mediated transient expression assay in Nicotiana benthamiana identified two virulence-related effectors, named SIB1 and SIB2 (Suppression of Immunity in N. benthamiana), of an anthracnose fungus Colletotrichum orbiculare, which infects both cucurbits and N. benthamiana. The Agrobacterium-mediated transient expression of SIB1 or SIB2 increased the susceptibility of N. benthamiana to C. orbiculare, which suggested these effectors can suppress immune responses in N. benthamiana. The presence of SIB1 and SIB2 homologs was found to be limited to the genus Colletotrichum. SIB1 suppressed both (i) the generation of reactive oxygen species triggered by two different pathogen-associated molecular patterns, chitin and flg22, and (ii) the cell death response triggered by the Phytophthora infestans INF1 elicitin in N. benthamiana. We determined the NMR-based structure of SIB1 to obtain its structural insights. The three-dimensional structure of SIB1 comprises five β-strands, each containing three disulfide bonds. The overall conformation was found to be a cylindrical shape, such as the well-known antiparallel β-barrel structure. However, the β-strands were found to display a unique topology, one pair of these β-strands formed a parallel β-sheet. These results suggest that the effector SIB1 present in Colletotrichum fungi has unique structural features and can suppress pathogen-associated molecular pattern-triggered immunity in N. benthamiana.

Indexed as

AgrobacteriumAmino Acid SequenceColletotrichumFungal ProteinsHost-Pathogen InteractionsNicotianaPlant ImmunityProtein ConformationReactive Oxygen SpeciesSequence Homology, Amino AcidVirulenceFungal ProteinsReactive Oxygen SpeciesColletotrichum orbiculareeffectorplant immunitysusceptibilitythree-dimensional structure

Identifiers

PMID34756891
PMCPMC8633582
OpenAlexW3211245133

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.