Evidence map›Paper›PMID 34755214›Full record

ReviewApplied microbiology and biotechnology2021

Methodological tools to study species of the genus Burkholderia.

Viola Camilla Scoffone, Gabriele Trespidi, Giulia Barbieri, Samuele Irudal, Aygun Israyilova, Silvia Buroni

Abstract readReview
In one paragraph

Review in Applied microbiology and biotechnology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. A CRISPR-Cas-associated transposon system for genome editing inApplied and environmental microbiology · 2024
    Article
  7. Article
  8. Specific biomarker mining and rapid detection ofFrontiers in microbiology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Viola Camilla ScoffoneDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.ORCID http://orcid.org/0000-0001-9979-1655
Gabriele TrespidiDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.ORCID http://orcid.org/0000-0002-6704-4409
Giulia BarbieriDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.ORCID http://orcid.org/0000-0001-6622-5876
Samuele IrudalDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.ORCID http://orcid.org/0000-0001-8005-0398
Aygun IsrayilovaDepartment of Molecular Biology and Biotechnology, Baku State University, Baku, Azerbaijan.ORCID http://orcid.org/0000-0002-6526-132X
Silvia BuroniDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy. silvia.buroni@unipv.it.ORCID http://orcid.org/0000-0002-6979-2275

Funding

Ministero dell'Istruzione, dell'Università e della Ricerca Dipartimenti di EccellenzaMinistero dell'Istruzione, dell'Università e della Ricerca Program 2018-2022
6 · The paper itself

Abstract

Bacteria belonging to the Burkholderia genus are extremely versatile and diverse. They can be environmental isolates, opportunistic pathogens in cystic fibrosis, immunocompromised or chronic granulomatous disease patients, or cause disease in healthy people (e.g., Burkholderia pseudomallei) or animals (as in the case of Burkholderia mallei). Since the genus was separated from the Pseudomonas one in the 1990s, the methodological tools to study and characterize these bacteria are evolving fast. Here we reviewed the techniques used in the last few years to update the taxonomy of the genus, to study gene functions and regulations, to deepen the knowledge on the drug resistance which characterizes these bacteria, and to elucidate their mechanisms to establish infections. The availability of these tools significantly impacts the quality of research on Burkholderia and the choice of the most appropriated is fundamental for a precise characterization of the species of interest.Key points• Updated techniques to study the genus Burkholderia were reviewed.• Taxonomy, genomics, assays, and animal models were described.• A comprehensive overview on recent advances in Burkholderia studies was made.

Indexed as

BurkholderiaBurkholderia InfectionsBurkholderia malleiBurkholderia pseudomalleiCystic FibrosisAnimalsHumansAnimal modelsBurkholderiaGenomicsQuorum sensingTaxonomy

Identifiers

PMID34755214
PMCPMC8578011

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.