Evidence map›Paper›PMID 34753946›Full record

ArticleNature communications2021

Single-molecule imaging with cell-derived nanovesicles reveals early binding dynamics at a cyclic nucleotide-gated ion channel.

Vishal R Patel, Arturo M Salinas, Darong Qi, Shipra Gupta, David J Sidote, Marcel P Goldschen-Ohm

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Review
  3. Bioelectricity and molecular signaling.Biophysical journal · 2024
    Article
  4. Review
  5. Engineering of Cell Derived-Nanovesicle as an Alternative to Exosome Therapy.Tissue engineering and regenerative medicine · 2024
    Review
  6. Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Vishal R PatelDepartment of Neuroscience, The University of Texas at Austin, Austin, TX, USA.ORCID 0000-0001-6447-7412
Arturo M SalinasDepartment of Physics, The University of Texas at Austin, Austin, TX, USA.
Darong QiDepartment of Neuroscience, The University of Texas at Austin, Austin, TX, USA.ORCID 0000-0001-7306-1750
Shipra GuptaDepartment of Neuroscience, The University of Texas at Austin, Austin, TX, USA.
David J SidoteDepartment of Neuroscience, The University of Texas at Austin, Austin, TX, USA.ORCID 0000-0001-7509-3246
Marcel P Goldschen-OhmDepartment of Neuroscience, The University of Texas at Austin, Austin, TX, USA. marcel.goldschen-ohm@austin.utexas.edu.ORCID 0000-0003-1466-9808

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ligand binding to membrane proteins is critical for many biological signaling processes. However, individual binding events are rarely directly observed, and their asynchronous dynamics are occluded in ensemble-averaged measures. For membrane proteins, single-molecule approaches that resolve these dynamics are challenged by dysfunction in non-native lipid environments, lack of access to intracellular sites, and costly sample preparation. Here, we introduce an approach combining cell-derived nanovesicles, microfluidics, and single-molecule fluorescence colocalization microscopy to track individual binding events at a cyclic nucleotide-gated TAX-4 ion channel critical for sensory transduction. Our observations reveal dynamics of both nucleotide binding and a subsequent conformational change likely preceding pore opening. Kinetic modeling suggests that binding of the second ligand is either independent of the first ligand or exhibits up to ~10-fold positive binding cooperativity. This approach is broadly applicable to studies of binding dynamics for proteins with extracellular or intracellular domains in native cell membrane.

Indexed as

AnimalsCyclic AMPCyclic Nucleotide-Gated Cation ChannelsHumansKineticsNucleotides, CyclicSignal TransductionSingle Molecule ImagingCyclic AMPCyclic Nucleotide-Gated Cation ChannelsNucleotides, Cyclic

Identifiers

PMID34753946
PMCPMC8578382

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.