Evidence map›Paper›PMID 34753908›Full record

ArticleNature communications2021

The chemotherapeutic CX-5461 primarily targets TOP2B and exhibits selective activity in high-risk neuroblastoma.

Min Pan, William C Wright, Richard H Chapple, Asif Zubair, Manbir Sandhu, Jake E Batchelder, Brandt C Huddle, Jonathan Low, Kaley B Blankenship, Yingzhe Wang and 20 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 88 citations in OpenAlex.

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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 3 institutions in 1 country.

Min PanDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
William C WrightDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Richard H ChappleDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Asif ZubairDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Manbir SandhuDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Jake E BatchelderDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Brandt C HuddleThe Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10065, USA.ORCID http://orcid.org/0000-0002-3653-2573
Jonathan LowDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Kaley B BlankenshipDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Yingzhe WangPreclinical Pharmacokinetic Shared Resource, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.ORCID http://orcid.org/0000-0002-7382-9683
Brittney GordonDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Payton ArcherDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Samuel W BradyDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.ORCID http://orcid.org/0000-0001-5518-7800
Sivaraman NatarajanDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.ORCID http://orcid.org/0000-0003-2608-2887
Matthew J PosgaiDepartments of Medicine and Human Genetics, The University of Chicago, Chicago, IL, 60637, USA.
John SchuetzDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Darcie MillerDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Ravi KalathurDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.ORCID http://orcid.org/0000-0002-4889-8003
Siquan ChenCellular Screening Center, The University of Chicago, Chicago, IL, 60637, USA.
Jon Patrick ConnellyDepartment of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.ORCID http://orcid.org/0000-0002-5564-1775
M Madan BabuDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.ORCID http://orcid.org/0000-0003-0556-6196
Michael A DyerDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.ORCID http://orcid.org/0000-0003-4027-4850
Shondra M Pruett-MillerDepartment of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.ORCID http://orcid.org/0000-0002-3793-585X
Burgess B FreemanPreclinical Pharmacokinetic Shared Resource, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Taosheng ChenDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.ORCID http://orcid.org/0000-0001-6420-3809
Lucy A GodleyDepartments of Medicine and Human Genetics, The University of Chicago, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0003-1914-9158
Scott C BlanchardDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.ORCID http://orcid.org/0000-0003-2717-9365
Elizabeth StewartDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.ORCID http://orcid.org/0000-0001-8005-0427
John EastonDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA. john.easton@stjude.org.ORCID http://orcid.org/0000-0003-4503-6608
Paul GeeleherDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA. paul.geeleher@stjude.org.ORCID http://orcid.org/0000-0002-5128-0087
St. Jude Children's Research Hospital · USUniversity of Chicago · USCornell University · US

Funding

Center for Multi-Scale Analysis of the Human EpitranscriptomeRM1HG011563 · NHGRI · WEILL MEDICAL COLL OF CORNELL UNIV · PI SAMIE R JAFFREY, Kathryn D Meyer · 2021 to 2026
$22.2M
Imaging Protein Synthesis on the Ribosome using Single-Molecule FRETR01GM079238 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI BLANCHARD, SCOTT C · 2006 to 2023
$7.0M
Developing new therapeutic strategies for pediatric tumors that lack clinically actionable mutationsR01CA260060 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Paul Geeleher · 2021 to 2026
$3.0M
Transporters and hematopoietic toxicityR01CA194206 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SCHUETZ, JOHN D · 2016 to 2020
$2.4M
Novel Therapeutic Approaches for the Treatment of NeuroblastomaR01CA248432 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DYER, MICHAEL A · 2020 to 2024
$2.4M
Computational tools for estimating cell-type-specific effects in bulk RNA-seq and spatial transcriptomics data, using reference single-cell RNA-seq datasetsR35GM138293 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI GEELEHER, PAUL · 2020 to 2024
$2.2M
Novel computational approaches for pharmacogenomic discoveryR00HG009679 · NHGRI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI GEELEHER, PAUL · 2019 to 2021
$739k
NCI NIH HHS R01 CA194206NCI NIH HHS R01 CA248432NCI NIH HHS R01 CA260060NHGRI NIH HHS R00 HG009679NHGRI NIH HHS RM1 HG011563NIGMS NIH HHS R01 GM079238NIGMS NIH HHS R35 GM138293
6 · The paper itself

Abstract

Survival in high-risk pediatric neuroblastoma has remained around 50% for the last 20 years, with immunotherapies and targeted therapies having had minimal impact. Here, we identify the small molecule CX-5461 as selectively cytotoxic to high-risk neuroblastoma and synergistic with low picomolar concentrations of topoisomerase I inhibitors in improving survival in vivo in orthotopic patient-derived xenograft neuroblastoma mouse models. CX-5461 recently progressed through phase I clinical trial as a first-in-human inhibitor of RNA-POL I. However, we also use a comprehensive panel of in vitro and in vivo assays to demonstrate that CX-5461 has been mischaracterized and that its primary target at pharmacologically relevant concentrations, is in fact topoisomerase II beta (TOP2B), not RNA-POL I. This is important because existing clinically approved chemotherapeutics have well-documented off-target interactions with TOP2B, which have previously been shown to cause both therapy-induced leukemia and cardiotoxicity-often-fatal adverse events, which can emerge several years after treatment. Thus, while we show that combination therapies involving CX-5461 have promising anti-tumor activity in vivo in neuroblastoma, our identification of TOP2B as the primary target of CX-5461 indicates unexpected safety concerns that should be examined in ongoing phase II clinical trials in adult patients before pursuing clinical studies in children.

Indexed as

AnimalsBenzothiazolesBlotting, WesternCell Line, TumorDNA Topoisomerases, Type IIDrug SynergismEnzyme ActivationFlow CytometryFluorescent Antibody TechniqueIndolesMiceMice, NudeMolecular Dynamics SimulationMorpholinesNaphthyridinesNeuroblastomaBenzothiazolesceralasertibCX 5461DNA Topoisomerases, Type IIIndolesMorpholinesNaphthyridinesPyrimidinesSulfonamides

Identifiers

PMID34753908
PMCPMC8578635
OpenAlexW3211664393

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.