Evidence map›Paper›PMID 34752450›Full record

ArticlePLoS biology2021

Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes.

Ying Liu, Tatiana A Demina, Simon Roux, Pakorn Aiewsakun, Darius Kazlauskas, Peter Simmonds, David Prangishvili, Hanna M Oksanen, Mart Krupovic

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
11.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
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  5. ICTV Virus Taxonomy Profile:The Journal of general virology · 2026
    Review
  6. ICTV Virus Taxonomy Profile:The Journal of general virology · 2026
    Review
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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 7 countries.

Ying LiuInstitut Pasteur, Université de Paris, Archaeal Virology Unit, Paris, France.ORCID 0000-0002-4966-3476
Tatiana A DeminaMolecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.ORCID 0000-0003-3746-5533
Simon RouxDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.ORCID 0000-0002-5831-5895
Pakorn AiewsakunNuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.ORCID 0000-0002-5665-4041
Darius KazlauskasInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.ORCID 0000-0001-6135-8549
Peter SimmondsNuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
David PrangishviliInstitut Pasteur, Université de Paris, Archaeal Virology Unit, Paris, France.
Hanna M OksanenMolecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.ORCID 0000-0003-3047-8294
Mart KrupovicInstitut Pasteur, Université de Paris, Archaeal Virology Unit, Paris, France.ORCID 0000-0001-5486-0098
Institut Pasteur · FRUniversity of Helsinki · FILawrence Berkeley National Laboratory · USMahidol University · THTbilisi State University · GEUniversity of Oxford · GBVilnius University · LT

Funding

Wellcome TrustWellcome Trust WT108418AIA
6 · The paper itself

Abstract

The archaeal tailed viruses (arTV), evolutionarily related to tailed double-stranded DNA (dsDNA) bacteriophages of the class Caudoviricetes, represent the most common isolates infecting halophilic archaea. Only a handful of these viruses have been genomically characterized, limiting our appreciation of their ecological impacts and evolution. Here, we present 37 new genomes of haloarchaeal tailed virus isolates, more than doubling the current number of sequenced arTVs. Analysis of all 63 available complete genomes of arTVs, which we propose to classify into 14 new families and 3 orders, suggests ancient divergence of archaeal and bacterial tailed viruses and points to an extensive sharing of genes involved in DNA metabolism and counterdefense mechanisms, illuminating common strategies of virus-host interactions with tailed bacteriophages. Coupling of the comparative genomics with the host range analysis on a broad panel of haloarchaeal species uncovered 4 distinct groups of viral tail fiber adhesins controlling the host range expansion. The survey of metagenomes using viral hallmark genes suggests that the global architecture of the arTV community is shaped through recurrent transfers between different biomes, including hypersaline, marine, and anoxic environments.

Indexed as

Biological EvolutionGenetic VariationArchaeal VirusesDNADNA, ViralGenome, ViralHost SpecificityMutationPhylogenyProkaryotic CellsViral ProteinsDNADNA, ViralViral Proteins

Identifiers

PMID34752450
PMCPMC8651126
OpenAlexW3209974768

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.