Evidence map›Paper›PMID 34751131›Full record

ArticleeLife2021

Evolution of natural lifespan variation and molecular strategies of extended lifespan in yeast.

Alaattin Kaya, Cheryl Zi Jin Phua, Mitchell Lee, Lu Wang, Alexander Tyshkovskiy, Siming Ma, Benjamin Barre, Weiqiang Liu, Benjamin R Harrison, Xiaqing Zhao and 6 more

Abstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Alaattin KayaDepartment of Biology, Virginia Commonwealth University, Richmond, United States.ORCID 0000-0002-6132-5197
Cheryl Zi Jin PhuaGenetics, Genome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Mitchell LeeDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, United States.
Lu WangDepartment of Environmental and Occupational Health Sciences, University of Washington, Seattle, United States.
Alexander TyshkovskiyDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, United States.
Siming MaGenetics, Genome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Benjamin BarreDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, United States.
Weiqiang LiuKey Laboratory of Animal Ecology and Conservation Biology, Chinese Academy of Sciences, Institute of Zoology, Beijing, China.
Benjamin R HarrisonDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, United States.
Xiaqing ZhaoDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, United States.
Xuming ZhouDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, United States.
Brian M WaskoDepartment of Biology, University of Houston - Clear Lake, Houston, United States.
Theo K BammlerDepartment of Environmental and Occupational Health Sciences, University of Washington, Seattle, United States.
Daniel El PromislowDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, United States.
Matt KaeberleinDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, United States.ORCID 0000-0002-1311-3421
Vadim N GladyshevDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, United States.ORCID 0000-0002-0372-7016

Funding

University of Washington Nathan Shock Center of Excellence in the Basic Biology of AgingP30AG013280 · NIA · UNIVERSITY OF WASHINGTON · PI David J. Marcinek, Jessica E Young · 1995 to 2026
$27.1M
Neurobehavior, Neuropathology, and Risk Factors in Alzheimer's DiseaseT32AG052354 · NIA · UNIVERSITY OF WASHINGTON · PI Brian C. Kraemer, ELAINE R. PESKIND · 2016 to 2026
$6.7M
Unbiased identification of interventions that extend lifespanR01AG067782 · NIA · BRIGHAM AND WOMEN'S HOSPITAL · PI GLADYSHEV, VADIM N. · 2019 to 2023
$3.5M
Role of rare damaging mutations in agingR01AG064223 · NIA · BRIGHAM AND WOMEN'S HOSPITAL · PI GLADYSHEV, VADIM N. · 2020 to 2024
$2.8M
Metabolome-Genome Associations for Determining Mechanisms of Aging in DrosophilaR01AG049494 · NIA · UNIVERSITY OF WASHINGTON · PI PROMISLOW, DANIEL EDWARD · 2015 to 2019
$1.8M
MOLECULAR MECHANISMS OF NATURAL LIFESPAN VARIATIONK01AG060040 · NIA · VIRGINIA COMMONWEALTH UNIVERSITY · PI KAYA, ALAATTIN · 2019 to 2022
$515k
Using metabolomics to identify mechanisms of natural variation in agingR56AG049494 · NIA · UNIVERSITY OF WASHINGTON · PI PROMISLOW, DANIEL EDWARD, VILLEN, JUDIT · 2022 to 2022
$319k
NIA NIH HHS K01 AG060040NIA NIH HHS P30 AG013280NIA NIH HHS R01 AG049494NIA NIH HHS R01 AG064223NIA NIH HHS R01 AG067782NIA NIH HHS R56 AG049494NIA NIH HHS T32 AG052354
6 · The paper itself

Abstract

To understand the genetic basis and selective forces acting on longevity, it is useful to examine lifespan variation among closely related species, or ecologically diverse isolates of the same species, within a controlled environment. In particular, this approach may lead to understanding mechanisms underlying natural variation in lifespan. Here, we analyzed 76 ecologically diverse wild yeast isolates and discovered a wide diversity of replicative lifespan (RLS). Phylogenetic analyses pointed to genes and environmental factors that strongly interact to modulate the observed aging patterns. We then identified genetic networks causally associated with natural variation in RLS across wild yeast isolates, as well as genes, metabolites, and pathways, many of which have never been associated with yeast lifespan in laboratory settings. In addition, a combined analysis of lifespan-associated metabolic and transcriptomic changes revealed unique adaptations to interconnected amino acid biosynthesis, glutamate metabolism, and mitochondrial function in long-lived strains. Overall, our multiomic and lifespan analyses across diverse isolates of the same species shows how gene-environment interactions shape cellular processes involved in phenotypic variation such as lifespan.

Indexed as

Gene Regulatory NetworksGenes, FungalSaccharomycesSaccharomyces cerevisiaeaginggene-environment interactiongeneticsgenomicslongevitymulti-omicsnatural lifespan variationS. cerevisiaeS. paradoxusyeast

Identifiers

PMID34751131
PMCPMC8612763

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.