Evidence map›Paper›PMID 34750949›Full record

ArticleChembiochem : a European journal of chemical biology2022

Optochemical Control of Bacterial Gene Expression: Novel Photocaged Compounds for Different Promoter Systems.

Fabian Hogenkamp, Fabienne Hilgers, Nora Lisa Bitzenhofer, Vera Ophoven, Mona Haase, Claus Bier, Dennis Binder, Karl-Erich Jaeger, Thomas Drepper, Jörg Pietruszka

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Fabian HogenkampInstitute of Bioorganic Chemistry, Heinrich Heine University Düsseldorf at Forschungszentrum Jülich Stetternicher Forst, 52426, Jülich, Germany.
Fabienne HilgersInstitute of Molecular Enzyme Technology Heinrich Heine University Düsseldorf at Forschungszentrum Jülich, Stetternicher Forst, 52426, Jülich, Germany.
Nora Lisa BitzenhoferInstitute of Molecular Enzyme Technology Heinrich Heine University Düsseldorf at Forschungszentrum Jülich, Stetternicher Forst, 52426, Jülich, Germany.
Vera OphovenInstitute of Bioorganic Chemistry, Heinrich Heine University Düsseldorf at Forschungszentrum Jülich Stetternicher Forst, 52426, Jülich, Germany.
Mona HaaseInstitute of Bioorganic Chemistry, Heinrich Heine University Düsseldorf at Forschungszentrum Jülich Stetternicher Forst, 52426, Jülich, Germany.
Claus BierInstitute of Bioorganic Chemistry, Heinrich Heine University Düsseldorf at Forschungszentrum Jülich Stetternicher Forst, 52426, Jülich, Germany.
Dennis BinderInstitute of Molecular Enzyme Technology Heinrich Heine University Düsseldorf at Forschungszentrum Jülich, Stetternicher Forst, 52426, Jülich, Germany.
Karl-Erich JaegerInstitute of Molecular Enzyme Technology Heinrich Heine University Düsseldorf at Forschungszentrum Jülich, Stetternicher Forst, 52426, Jülich, Germany.ORCID 0000-0002-6036-0708
Thomas DrepperInstitute of Molecular Enzyme Technology Heinrich Heine University Düsseldorf at Forschungszentrum Jülich, Stetternicher Forst, 52426, Jülich, Germany.ORCID 0000-0002-0096-8084
Jörg PietruszkaInstitute of Bioorganic Chemistry, Heinrich Heine University Düsseldorf at Forschungszentrum Jülich Stetternicher Forst, 52426, Jülich, Germany.ORCID 0000-0002-9819-889X

Funding

Bioeconomy Science CenterMinistry of Culture and Science of the German federal state of North Rhine-Westphalia MKWNRW Strategieprojekt BioSC 313/323-400-00213
6 · The paper itself

Abstract

Photocaged compounds are applied for implementing precise, optochemical control of gene expression in bacteria. To broaden the scope of UV-light-responsive inducer molecules, six photocaged carbohydrates were synthesized and photochemically characterized, with the absorption exhibiting a red-shift. Their differing linkage through ether, carbonate, and carbamate bonds revealed that carbonate and carbamate bonds are convenient. Subsequently, those compounds were successfully applied in vivo for controlling gene expression in E. coli via blue light illumination. Furthermore, benzoate-based expression systems were subjected to light control by establishing a novel photocaged salicylic acid derivative. Besides its synthesis and in vitro characterization, we demonstrate the challenging choice of a suitable promoter system for light-controlled gene expression in E. coli. We illustrate various bottlenecks during both photocaged inducer synthesis and in vivo application and possibilities to overcome them. These findings pave the way towards novel caged inducer-dependent systems for wavelength-selective gene expression.

Indexed as

CarbohydratesEscherichia coliGene Expression Regulation, BacterialPhotochemical ProcessesPromoter Regions, GeneticCarbohydratescaged compoundsgene expressionoptogeneticsphotochemistrysynthetic biology

Identifiers

PMID34750949
PMCPMC9299732

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.