Evidence map›Paper›PMID 34750413›Full record

ArticleScientific reports2021

Novel findings from family-based exome sequencing for children with biliary atresia.

Kien Trung Tran, Vinh Sy Le, Lan Thi Mai Dao, Huyen Khanh Nguyen, Anh Kieu Mai, Ha Thi Nguyen, Minh Duy Ngo, Quynh Anh Tran, Liem Thanh Nguyen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Biliary atresia-related liver fibrosis.Frontiers in cell and developmental biology · 2026
    Review
  3. Biliary atresia: the role of gut microbiome, and microbial metabolites.Frontiers in cellular and infection microbiology · 2024
    Review
  4. Contribution ofInternational journal of molecular sciences · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. Biliary atresia and congenital disorders of the extrahepatic bile ducts.World journal of gastrointestinal pharmacology and therapeutics · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Kien Trung Tran *Vinmec Research Institute of Stem Cell and Gene Technology, 458 Minh Khai, Hai Ba Trung District, Hanoi, Vietnam. trantrungkien80@gmail.com.
Vinh Sy Le *Vinmec Research Institute of Stem Cell and Gene Technology, 458 Minh Khai, Hai Ba Trung District, Hanoi, Vietnam.
Lan Thi Mai DaoVinmec Research Institute of Stem Cell and Gene Technology, 458 Minh Khai, Hai Ba Trung District, Hanoi, Vietnam.
Huyen Khanh NguyenBioequivalence Center, National Institute of Drug Quality Control, 11/157 Bang B, Hoang Mai District, Hanoi, Vietnam.
Anh Kieu MaiVinmec International Hospital, 458 Minh Khai, Hai Ba Trung District, Hanoi, Vietnam.
Ha Thi NguyenVinmec International Hospital, 458 Minh Khai, Hai Ba Trung District, Hanoi, Vietnam.
Minh Duy NgoVinmec International Hospital, 458 Minh Khai, Hai Ba Trung District, Hanoi, Vietnam.
Quynh Anh TranVietnam National Children's Hospital, 18/879 La Thanh, Dong Da District, Hanoi, Vietnam.
Liem Thanh NguyenVinmec Research Institute of Stem Cell and Gene Technology, 458 Minh Khai, Hai Ba Trung District, Hanoi, Vietnam.
Vinmec International Hospital · VNChildren's Hospital 1 · VNHanoi National University of Education · VN

Funding

Vinmec Healthcare System ISC18.13
6 · The paper itself

Abstract

Biliary atresia (BA) is a progressive inflammation and fibrosis of the biliary tree characterized by the obstruction of bile flow, which results in liver failure, scarring and cirrhosis. This study aimed to explore the elusive aetiology of BA by conducting whole exome sequencing for 41 children with BA and their parents (35 trios, including 1 family with 2 BA-diagnosed children and 5 child-mother cases). We exclusively identified and validated a total of 28 variants (17 X-linked, 6 de novo and 5 homozygous) in 25 candidate genes from our BA cohort. These variants were among the 10% most deleterious and had a low minor allele frequency against the employed databases: Kinh Vietnamese (KHV), GnomAD and 1000 Genome Project. Interestingly, AMER1, INVS and OCRL variants were found in unrelated probands and were first reported in a BA cohort. Liver specimens and blood samples showed identical variants, suggesting that somatic variants were unlikely to occur during morphogenesis. Consistent with earlier attempts, this study implicated genetic heterogeneity and non-Mendelian inheritance of BA.

Indexed as

Adaptor Proteins, Signal TransducingBiliary AtresiaCohort StudiesExome SequencingFemaleGene FrequencyGenes, RecessiveGenes, X-LinkedGenetic Association StudiesGenetic MarkersGenetic Predisposition to DiseaseGenetic VariationHumansInfantInfant, NewbornMaleAdaptor Proteins, Signal TransducingAMER1 protein, humanGenetic MarkersINVS protein, humanOCRL protein, humanPhosphoric Monoester HydrolasesTranscription FactorsTumor Suppressor Proteins

Identifiers

PMID34750413
PMCPMC8575792
OpenAlexW3171591243

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.