Evidence map›Paper›PMID 34748534›Full record

ArticlePLoS genetics2021

High-efficiency CRISPR gene editing in C. elegans using Cas9 integrated into the genome.

Matthew L Schwartz, M Wayne Davis, Matthew S Rich, Erik M Jorgensen

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 43 citations in OpenAlex.

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  9. Advances in CRISPR-Cas9 in lineage tracing of model animals.Animal models and experimental medicine · 2025
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  11. Molecular breeding of tomato: Advances and challenges.Journal of integrative plant biology · 2025
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  13. microPublication biology · 2025
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  17. Development of aging research inCurrent research in food science · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Matthew L SchwartzHoward Hughes Medical Institute and School of Biological Sciences, University of Utah, Salt Lake City, Utah, United States of America.
M Wayne DavisHoward Hughes Medical Institute and School of Biological Sciences, University of Utah, Salt Lake City, Utah, United States of America.
Matthew S RichHoward Hughes Medical Institute and School of Biological Sciences, University of Utah, Salt Lake City, Utah, United States of America.ORCID 0000-0003-2353-4681
Erik M JorgensenHoward Hughes Medical Institute and School of Biological Sciences, University of Utah, Salt Lake City, Utah, United States of America.ORCID 0000-0002-2978-8028
Howard Hughes Medical Institute · US

Funding

Engineering the C. Elegans GenomeR01GM095817 · NIGMS · UNIVERSITY OF UTAH · PI JORGENSEN, ERIK M · 2011 to 2021
$2.8M
Toward a library of balanced neuronal gene knockouts in C. elegansF32GM133139 · NIGMS · UNIVERSITY OF UTAH · PI RICH, MATTHEW SAUL · 2019 to 2020
$127k
NIGMS NIH HHS F32 GM133139NIGMS NIH HHS R01 GM095817
6 · The paper itself

Abstract

Gene editing in C. elegans using plasmid-based CRISPR reagents requires microinjection of many animals to produce a single edit. Germline silencing of plasmid-borne Cas9 is a major cause of inefficient editing. Here, we present a set of C. elegans strains that constitutively express Cas9 in the germline from an integrated transgene. These strains markedly improve the success rate for plasmid-based CRISPR edits. For simple, short homology arm GFP insertions, 50-100% of injected animals typically produce edited progeny, depending on the target locus. Template-guided editing from an extrachromosomal array is maintained over multiple generations. We have built strains with the Cas9 transgene on multiple chromosomes. Additionally, each Cas9 locus also contains a heatshock-driven Cre recombinase for selectable marker removal and a bright fluorescence marker for easy outcrossing. These integrated Cas9 strains greatly reduce the workload for producing individual genome edits.

Indexed as

CRISPR-Cas SystemsGenome, HelminthAnimalsCaenorhabditis elegansCRISPR-Associated Protein 9Gene EditingCRISPR-Associated Protein 9

Identifiers

PMID34748534
PMCPMC8601624
OpenAlexW3213377680

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.