Evidence map›Paper›PMID 34747692›Full record

ArticleeLife2021

Sumoylation of the human histone H4 tail inhibits p300-mediated transcription by RNA polymerase II in cellular extracts.

Calvin Jon A Leonen, Miho Shimada, Caroline E Weller, Tomoyoshi Nakadai, Peter L Hsu, Elizabeth L Tyson, Arpit Mishra, Patrick Mm Shelton, Martin Sadilek, R David Hawkins and 3 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
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  6. Article
  7. Review
  8. Particulate matter-induced epigenetic modifications and lung complications.European respiratory review : an official journal of the European Respiratory Society · 2024
    Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Gastric Cancer in the Era of Epigenetics.International journal of molecular sciences · 2024
    Review
  16. Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Calvin Jon A LeonenDepartment of Chemistry, University of Washington, Seattle, United States.ORCID 0000-0003-3003-9021
Miho ShimadaLaboratory of Biochemistry and Molecular Biology, The Rockefeller University, New York City, United States.
Caroline E WellerDepartment of Chemistry, University of Washington, Seattle, United States.
Tomoyoshi NakadaiLaboratory of Biochemistry and Molecular Biology, The Rockefeller University, New York City, United States.
Peter L HsuDepartment of Pharmacology, University of Washington, Seattle, United States.
Elizabeth L TysonDepartment of Chemistry, University of Washington, Seattle, United States.
Arpit MishraDepartment of Genome Sciences, Department of Medicine, University of Washington, Seattle, United States.
Patrick Mm SheltonDepartment of Chemistry, University of Washington, Seattle, United States.
Martin SadilekDepartment of Chemistry, University of Washington, Seattle, United States.
R David HawkinsDepartment of Genome Sciences, Department of Medicine, University of Washington, Seattle, United States.ORCID 0000-0002-2997-9457
Ning ZhengDepartment of Pharmacology, University of Washington, Seattle, United States.
Robert G RoederLaboratory of Biochemistry and Molecular Biology, The Rockefeller University, New York City, United States.ORCID 0000-0003-3865-8572
Champak ChatterjeeDepartment of Chemistry, University of Washington, Seattle, United States.ORCID 0000-0001-5772-4438
University of Washington · USHoward Hughes Medical Institute · USRockefeller University · USCancer Institute (WIA) · IN

Funding

TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
Nuclear Receptor Coactivator Functions and MechanismsR01DK071900 · NIDDK · ROCKEFELLER UNIVERSITY · PI ROEDER, ROBERT G · 2005 to 2015
$5.9M
Functional and Mechanistic Study of Histone Crotonylation in Hematological MalignanciesR01CA204639 · NCI · ROCKEFELLER UNIVERSITY · PI ALLIS, CHARLES DAVID, ARMSTRONG, SCOTT A · 2016 to 2020
$3.5M
Role of novel onco-histone mutations in B-cell malignanciesR01CA234561 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CESARMAN, ETHEL · 2019 to 2023
$3.3M
Functional assessment of distal regulatory SNPs associated with type 1 diabetes.R01DK103667 · NIDDK · UNIVERSITY OF WASHINGTON · PI HAWKINS, RAYMOND DAVID · 2015 to 2019
$2.5M
Chemical Strategies to Investigate Gene Regulation By Histone SumoylationR01GM110430 · NIGMS · UNIVERSITY OF WASHINGTON · PI CHATTERJEE, CHAMPAK · 2014 to 2022
$2.5M
Structure and Mechanism of the SET1/COMPASS H3K4 Methyltransferase ComplexR01HD097408 · NICHD · UNIVERSITY OF WASHINGTON · PI CHATTERJEE, CHAMPAK, ZHENG, NING · 2020 to 2024
$1.9M
Functional validation of Rheumatoid Arthritis-associated distal regulatory SNPs iR01AR065952 · NIAMS · UNIVERSITY OF WASHINGTON · PI HAWKINS, RAYMOND DAVID · 2015 to 2018
$1.8M
Howard Hughes Medical InstituteNCI NIH HHS R01 CA204639NCI NIH HHS R01 CA234561NIAMS NIH HHS R01 AR065952NICHD NIH HHS R01 HD097408NIDDK NIH HHS R01 DK071900NIDDK NIH HHS R01 DK103667NIGMS NIH HHS R01 GM110430NIGMS NIH HHS T32 GM008268
6 · The paper itself

Abstract

The post-translational modification of histones by the small ubiquitin-like modifier (SUMO) protein has been associated with gene regulation, centromeric localization, and double-strand break repair in eukaryotes. Although sumoylation of histone H4 was specifically associated with gene repression, this could not be proven due to the challenge of site-specifically sumoylating H4 in cells. Biochemical crosstalk between SUMO and other histone modifications, such as H4 acetylation and H3 methylation, that are associated with active genes also remains unclear. We addressed these challenges in mechanistic studies using an H4 chemically modified at Lys12 by SUMO-3 (H4K12su) and incorporated into mononucleosomes and chromatinized plasmids for functional studies. Mononucleosome-based assays revealed that H4K12su inhibits transcription-activating H4 tail acetylation by the histone acetyltransferase p300, as well as transcription-associated H3K4 methylation by the extended catalytic module of the Set1/COMPASS (complex of proteins associated with Set1) histone methyltransferase complex. Activator- and p300-dependent in vitro transcription assays with chromatinized plasmids revealed that H4K12su inhibits both H4 tail acetylation and RNA polymerase II-mediated transcription. Finally, cell-based assays with a SUMO-H4 fusion that mimics H4 tail sumoylation confirmed the negative crosstalk between histone sumoylation and acetylation/methylation. Thus, our studies establish the key role for histone sumoylation in gene silencing and its negative biochemical crosstalk with active transcription-associated marks in human cells.

Indexed as

SumoylationTranscription, GeneticCell ExtractsHistonesHumansRNA Polymerase IICell ExtractsHistonesRNA Polymerase IIacetylationbiochemistrychemical biologychromatinchromosomesE. coligene expressionhistonehumanS. cerevisiaeSUMOsumoylationtranscription

Identifiers

PMID34747692
PMCPMC8626089
OpenAlexW3214133275

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.