Evidence map›Paper›PMID 34747059›Full record

ArticleStatistics in medicine2022

Bayesian spatial models for voxel-wise prostate cancer classification using multi-parametric magnetic resonance imaging data.

Jin Jin, Lin Zhang, Ethan Leng, Gregory J Metzger, Joseph S Koopmeiners

Abstract read
In one paragraph

Article in Statistics in medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jin JinDivision of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, Minnesota, USA.ORCID 0000-0001-8357-8585
Lin ZhangDivision of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, Minnesota, USA.
Ethan LengDepartment of Biomedical Engineering, University of Minnesota, Minneapolis, Minnesota, USA.
Gregory J MetzgerDepartment of Radiology, Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota, USA.
Joseph S KoopmeinersDivision of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, Minnesota, USA.ORCID 0000-0001-6147-3168

Funding

Women's CancerP30CA077598 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Jeffrey S. Miller · 1998 to 2026
$100.4M
TRD4 - Ultrahigh Field Engineering and SafetyP41EB027061 · NIBIB · UNIVERSITY OF MINNESOTA · PI Gregory John Metzger, KAMIL UGURBIL · 2019 to 2026
$11.7M
Computer Aided Diagnostic System for Prostate Cancer Detection Using Quantitative Multiparametric MRIR01CA241159 · NCI · UNIVERSITY OF MINNESOTA · PI METZGER, GREGORY JOHN · 2021 to 2025
$3.0M
Development of an Optimal MRI Platform for Prostate Investigations at 7 TeslaR01CA155268 · NCI · UNIVERSITY OF MINNESOTA · PI METZGER, GREGORY JOHN · 2012 to 2016
$2.0M
NCI NIH HHS P30 CA077598NCI NIH HHS R01 CA155268NCI NIH HHS R01 CA241159NIBIB NIH HHS P41 EB027061
6 · The paper itself

Abstract

Multi-parametric magnetic resonance imaging (mpMRI) has been playing an increasingly important role in the detection of prostate cancer (PCa). Various computer-aided detection algorithms were proposed for automated PCa detection by combining information in multiple mpMRI parameters. However, there are specific features of mpMRI, including between-voxel correlation within each prostate and heterogeneity across patients, that have not been fully explored but could potentially improve PCa detection if leveraged appropriately. This article proposes novel Bayesian approaches for voxel-wise PCa classification that accounts for spatial correlation and between-patient heterogeneity in the mpMRI data. Modeling the spatial correlation is challenging due to the extreme high dimensionality of the data, and we propose three scalable approaches based on Nearest Neighbor Gaussian Process (NNGP), reduced-rank approximation, and a conditional autoregressive (CAR) model that approximates a Gaussian Process with the Matérn covariance, respectively. Our simulation study shows that properly modeling the spatial correlation and between-patient heterogeneity can substantially improve PCa classification. Application to in vivo data illustrates that classification is improved by all three spatial modeling approaches considered, while modeling the between-patient heterogeneity does not further improve our classifiers. Among the proposed models, the NNGP-based model is recommended given its high classification accuracy and computational efficiency.

Indexed as

ProstateProstatic NeoplasmsAlgorithmsBayes TheoremHumansMagnetic Resonance ImagingMaleBayesian hierarchical modelingmultiimage spatial modelingmulti-parametric MRInearest neighbor Gaussian processvoxel-wise PCa classification

Identifiers

PMID34747059
PMCPMC9316890

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.