Evidence map›Paper›PMID 34743697›Full record

ArticleBMC genomics2021

Effects of nitrogen levels on gene expression and amino acid metabolism in Welsh onion.

Chen Zhao, Guanchu Ma, Lin Zhou, Song Zhang, Le Su, Xin Sun, Orlando Borrás-Hidalgo, Kunlun Li, Qiulin Yue, Lin Zhao

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Welsh Onion (Plants (Basel, Switzerland) · 2022
    Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Chen ZhaoState Key Laboratory of Biobased Material and Green Papermaking, Shandong Provincial Key Lab. of Microbial Engineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China.
Guanchu MaState Key Laboratory of Biobased Material and Green Papermaking, Shandong Provincial Key Lab. of Microbial Engineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China.
Lin ZhouState Key Laboratory of Biobased Material and Green Papermaking, Shandong Provincial Key Lab. of Microbial Engineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China.
Song ZhangState Key Laboratory of Biobased Material and Green Papermaking, Shandong Provincial Key Lab. of Microbial Engineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China.
Le SuState Key Laboratory of Biobased Material and Green Papermaking, Shandong Provincial Key Lab. of Microbial Engineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China.
Xin SunState Key Laboratory of Biobased Material and Green Papermaking, Shandong Provincial Key Lab. of Microbial Engineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China.
Orlando Borrás-HidalgoState Key Laboratory of Biobased Material and Green Papermaking, Shandong Provincial Key Lab. of Microbial Engineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China.
Kunlun LiJinan Hangchen Biotechnology Co., Ltd, Jinan, China.
Qiulin YueState Key Laboratory of Biobased Material and Green Papermaking, Shandong Provincial Key Lab. of Microbial Engineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China. yueqiulin88@163.com.
Lin ZhaoState Key Laboratory of Biobased Material and Green Papermaking, Shandong Provincial Key Lab. of Microbial Engineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China. sdilizhaolin@163.com.
Qilu University of Technology · CNShandong Academy of Sciences · CN

Funding

Key Technologies Research and Development Program of China 2016YFD0200100Key Technology Research and Development Program of Shandong 2018YYSP007Key Technology Research and Development Program of Shandong 2018YYSP022Key Technology Research and Development Program of Shandong 2019QYTPY024, 2018YFJH0404 and 2018CXGC0204Key Technology Research and Development Program of Shandong 2019YYSP019Science, education and industry integration innovation pilot project of Qilu University of Technology (Shandong Academy of Sciences) 2020KJC-GH10
6 · The paper itself

Abstract

backgroundWelsh onion constitutes an important crop due to its benefits in traditional medicine. Nitrogen is an important nutrient for plant growth and yield; however, little is known about its influence on the mechanisms of Welsh onion regulation genes. In this study, we introduced a gene expression and amino acid analysis of Welsh onion treated with different concentrations of nitrogen (N0, N1, and N2 at 0 kg/ha, 130 kg/ha, and 260 kg/ha, respectively).

resultsApproximately 1,665 genes were differentially regulated with different concentrations of nitrogen. Gene ontology enrichment analysis revealed that the genes involved in metabolic processes, protein biosynthesis, and transportation of amino acids were highly represented. KEGG analysis indicated that the pathways were related to amino acid metabolism, cysteine, beta-alanine, arginine, proline, and glutathione. Differential gene expression in response to varying nitrogen concentrations resulted in different amino acid content. A close relationship between gene expression and the content of amino acids was observed.

conclusionsThis work examined the effects of nitrogen on gene expression and amino acid synthesis and provides important evidence on the efficient use of nitrogen in Welsh onion.

Indexed as

NitrogenOnionsAmino AcidsGene OntologyTranscriptomeAmino AcidsNitrogenAmino acidsNitrogenTranscriptomeWelsh onion

Identifiers

PMID34743697
PMCPMC8573885
OpenAlexW3212152331

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.