Evidence map›Paper›PMID 34741605›Full record

ArticleThe Plant cell2022

Mutual upregulation of HY5 and TZP in mediating phytochrome A signaling.

Cong Li, Lijuan Qi, Shaoman Zhang, Xiaojing Dong, Yanjun Jing, Jinkui Cheng, Ziyi Feng, Jing Peng, Hong Li, Yangyang Zhou and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. TCP3 is a substrate of the COP1/SPA ubiquitin ligase to regulate anthocyanin accumulation and flowering time inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Review
  8. Article
  9. Functional dissection of phytochrome A in plants.Frontiers in plant science · 2024
    Review
  10. Rice (Plants (Basel, Switzerland) · 2023
    Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 2 countries.

Cong LiState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.ORCID 0000-0001-5514-9580
Lijuan QiState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.ORCID 0000-0002-9846-7420
Shaoman ZhangState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.ORCID 0000-0001-9510-7983
Xiaojing DongState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.ORCID 0000-0002-9807-0044
Yanjun JingKey Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.ORCID 0000-0002-4772-7923
Jinkui ChengState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.ORCID 0000-0002-7484-0497
Ziyi FengState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.ORCID 0000-0003-4063-5628
Jing PengState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.ORCID 0000-0001-8831-129X
Hong LiState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.ORCID 0000-0001-8121-7081
Yangyang ZhouState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.ORCID 0000-0001-5297-4497
Xiaoji WangState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.ORCID 0000-0002-1126-3530
Run HanState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.ORCID 0000-0003-3053-3070
Jie DuanState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.ORCID 0000-0003-2870-8441
William TerzaghiDepartment of Biology, Wilkes University, Wilkes-Barre, Pennsylvania 18766, USA.ORCID 0000-0002-7536-6432
Rongcheng LinKey Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.ORCID 0000-0001-8346-3390
Jigang LiState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.ORCID 0000-0002-4395-2656
China Agricultural University · CNChinese Academy of Sciences · CNWilkes University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phytochrome A (phyA) is the far-red (FR) light photoreceptor in plants that is essential for seedling de-etiolation under FR-rich environments, such as canopy shade. TANDEM ZINC-FINGER/PLUS3 (TZP) was recently identified as a key component of phyA signal transduction in Arabidopsis thaliana; however, how TZP is integrated into the phyA signaling networks remains largely obscure. Here, we demonstrate that ELONGATED HYPOCOTYL5 (HY5), a well-characterized transcription factor promoting photomorphogenesis, mediates FR light induction of TZP expression by directly binding to a G-box motif in the TZP promoter. Furthermore, TZP physically interacts with CONSTITUTIVE PHOTOMORPHOGENIC1 (COP1), an E3 ubiquitin ligase targeting HY5 for 26S proteasome-mediated degradation, and this interaction inhibits COP1 interaction with HY5. Consistent with those results, TZP post-translationally promotes HY5 protein stability in FR light, and in turn, TZP protein itself is destabilized by COP1 in both dark and FR light conditions. Moreover, tzp hy5 double mutants display an additive phenotype relative to their respective single mutants under high FR light intensities, indicating that TZP and HY5 also function in largely independent pathways. Together, our data demonstrate that HY5 and TZP mutually upregulate each other in transmitting the FR light signal, thus providing insights into the complicated but delicate control of phyA signaling networks.

Indexed as

Signal TransductionUp-RegulationArabidopsisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsGene Expression Regulation, PlantPhytochrome ATranscription FactorsArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsHY5 protein, ArabidopsisPHYA protein, ArabidopsisPhytochrome ATranscription FactorsTZP protein, Arabidopsis

Identifiers

PMID34741605
PMCPMC8774092
OpenAlexW3211689627

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.