Evidence map›Paper›PMID 34740791›Full record

ArticleMolecular therapy : the journal of the American Society of Gene Therapy2022

Reprogramming of the heavy-chain CDR3 regions of a human antibody repertoire.

Tianling Ou, Wenhui He, Brian D Quinlan, Yan Guo, Mai H Tran, Pabalu Karunadharma, Hajeung Park, Meredith E Davis-Gardner, Yiming Yin, Xia Zhang and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular therapy : the journal of the American Society of Gene Therapy, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

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  12. Research square · 2024
    Article
  13. bioRxiv : the preprint server for biology · 2023
    Article
  14. Article
  15. Adenoviral vectors infect B lymphocytes in vivo.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Article
  16. In vitro affinity maturation of broader and more-potent variants of the HIV-1-neutralizing antibody CAP256-VRC26.25.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Tianling OuDepartment of Microbiology and Immunology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Wenhui HeDepartment of Microbiology and Immunology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Brian D QuinlanDepartment of Microbiology and Immunology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Yan GuoDepartment of Microbiology and Immunology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Mai H TranDepartment of Microbiology and Immunology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Pabalu KarunadharmaGenomics Core, The Scripps Research Institute, Jupiter, FL 33458, USA.
Hajeung ParkX-ray Crystallography Core, The Scripps Research Institute, Jupiter, FL 33458, USA.
Meredith E Davis-GardnerThe Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA.
Yiming YinDepartment of Microbiology and Immunology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Xia ZhangDepartment of Microbiology and Immunology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Haimin WangInstitute of Chemical Biology, Shenzhen Bay Laboratory, Shenzhen, China.
Guocai ZhongInstitute of Chemical Biology, Shenzhen Bay Laboratory, Shenzhen, China; School of Biology and Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, Shenzhen, China.
Michael FarzanDepartment of Microbiology and Immunology, The Scripps Research Institute, Jupiter, FL 33458, USA. Electronic address: mfarzan@scripps.edu.
Scripps Research Institute · USEmory University · USPeking University · CNShenzhen Bay Laboratory · CN

Funding

Project 4: A permanent off-switch for AAVU19AI149646 · NIAID · UNIVERSITY OF FLORIDA · PI FARZAN, MICHAEL R. · 2020 to 2024
$14.0M
Therapeutic Use of an Enhanced Form of CD4-IgR37AI091476 · NIAID · UNIVERSITY OF FLORIDA · PI FARZAN, MICHAEL R. · 2016 to 2025
$9.2M
A safety switch for an effective HIV-1 vaccineDP1DA043912 · NIDA · SCRIPPS FLORIDA · PI FARZAN, MICHAEL R. · 2017 to 2021
$4.8M
Eliciting tyrosine-sulfated neutralizing antibodies recognizing the Env apexR21AI152836 · NIAID · SCRIPPS FLORIDA · PI FARZAN, MICHAEL R. · 2020 to 2021
$509k
NIAID NIH HHS R21 AI152836NIAID NIH HHS R37 AI091476NIAID NIH HHS U19 AI149646NIDA NIH HHS DP1 DA043912
6 · The paper itself

Abstract

B cells have been engineered ex vivo to express an HIV-1 broadly neutralizing antibody (bNAb). B cell reprograming may be scientifically and therapeutically useful, but current approaches limit B cell repertoire diversity and disrupt the organization of the heavy-chain locus. A more diverse and physiologic B cell repertoire targeting a key HIV-1 epitope could facilitate evaluation of vaccines designed to elicit bNAbs, help identify more potent and bioavailable bNAb variants, or directly enhance viral control in vivo. Here we address the challenges of generating such a repertoire by replacing the heavy-chain CDR3 (HCDR3) regions of primary human B cells. To do so, we identified and utilized an uncharacterized Cas12a ortholog that recognizes PAM motifs present in human JH genes. We also optimized the design of 200 nucleotide homology-directed repair templates (HDRT) by minimizing the required 3'-5' deletion of the HDRT-complementary strand. Using these techniques, we edited primary human B cells to express a hemagglutinin epitope tag and the HCDR3 regions of the bNAbs PG9 and PG16. Those edited with bNAb HCDR3 efficiently bound trimeric HIV-1 antigens, implying they could affinity mature in vivo in response to the same antigens. This approach generates diverse B cell repertoires recognizing a key HIV-1 neutralizing epitope.

Indexed as

HIV-1HIV InfectionsAntibodies, NeutralizingBroadly Neutralizing AntibodiesEpitopesHIV AntibodiesHumansAntibodies, NeutralizingBroadly Neutralizing AntibodiesEpitopesHIV AntibodiesB cell receptorCas12aHCDR3HDRHIV-1 V2-glycan antibodyMb2Cas12aPG16PG9SOSIP

Identifiers

PMID34740791
PMCPMC8753427
OpenAlexW3210162770

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.