Evidence map›Paper›PMID 34738149›Full record

ArticleCellular and molecular life sciences : CMLS2021

A survey of substrate specificity among Auxiliary Activity Family 5 copper radical oxidases.

Maria E Cleveland, Yann Mathieu, David Ribeaucourt, Mireille Haon, Paul Mulyk, Jason E Hein, Mickael Lafond, Jean-Guy Berrin, Harry Brumer

Open access · greenAbstract read
In one paragraph

Article in Cellular and molecular life sciences : CMLS, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

  1. Copper Radical Oxidases Contribute to Virulence inPathogens (Basel, Switzerland) · 2026
    Article
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  10. Enzymatic reactions towards aldehydes: An overview.Flavour and fragrance journal · 2023
    Review
  11. Characterization of a Galactose Oxidase fromFoods (Basel, Switzerland) · 2023
    Article
  12. Review
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Maria E ClevelandMichael Smith Laboratories, University of British Columbia, 2185 East Mall, Vancouver, BC, V6T 1Z4, Canada.ORCID http://orcid.org/0000-0003-1923-0845
Yann MathieuMichael Smith Laboratories, University of British Columbia, 2185 East Mall, Vancouver, BC, V6T 1Z4, Canada.ORCID http://orcid.org/0000-0001-6698-1911
David RibeaucourtINRAE, Aix Marseille Univ, UMR 1163 Biodiversité et Biotechnologie Fongiques, 13009, Marseille, France.ORCID http://orcid.org/0000-0003-0927-1491
Mireille HaonINRAE, Aix Marseille Univ, UMR 1163 Biodiversité et Biotechnologie Fongiques, 13009, Marseille, France.
Paul MulykDepartment of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC, V6T 1Z1, Canada.
Jason E HeinDepartment of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC, V6T 1Z1, Canada.ORCID http://orcid.org/0000-0002-4345-3005
Mickael LafondAix Marseille Univ, CNRS, Centrale Marseille, iSm2, Marseille, France.ORCID http://orcid.org/0000-0003-2646-0286
Jean-Guy BerrinINRAE, Aix Marseille Univ, UMR 1163 Biodiversité et Biotechnologie Fongiques, 13009, Marseille, France.ORCID http://orcid.org/0000-0001-7570-3745
Harry BrumerMichael Smith Laboratories, University of British Columbia, 2185 East Mall, Vancouver, BC, V6T 1Z4, Canada. brumer@msl.ubc.ca.ORCID http://orcid.org/0000-0002-0101-862X
University of British Columbia · CACentre National de la Recherche Scientifique · FRInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRUniversity of British Columbia Hospital · CA

Funding

agence nationale de la recherche ANR-17-CE07-0047genome british columbia 10405genome canada 10405natural sciences and engineering research council of canada NETGP 451431-13natural sciences and engineering research council of canada RGPIN-2018-03892natural sciences and engineering research council of canada STPGP 493781-16
6 · The paper itself

Abstract

There is significant contemporary interest in the application of enzymes to replace or augment chemical reagents toward the development of more environmentally sound and sustainable processes. In particular, copper radical oxidases (CRO) from Auxiliary Activity Family 5 Subfamily 2 (AA5_2) are attractive, organic cofactor-free catalysts for the chemoselective oxidation of alcohols to the corresponding aldehydes. These enzymes were first defined by the archetypal galactose-6-oxidase (GalOx, EC 1.1.3.13) from the fungus Fusarium graminearum. The recent discovery of specific alcohol oxidases (EC 1.1.3.7) and aryl alcohol oxidases (EC 1.1.3.47) within AA5_2 has indicated a potentially broad substrate scope among fungal CROs. However, only relatively few AA5_2 members have been characterized to date. Guided by sequence similarity network and phylogenetic analysis, twelve AA5_2 homologs have been recombinantly produced and biochemically characterized in the present study. As defined by their predominant activities, these comprise four galactose 6-oxidases, two raffinose oxidases, four broad-specificity primary alcohol oxidases, and two non-carbohydrate alcohol oxidases. Of particular relevance to applications in biomass valorization, detailed product analysis revealed that two CROs produce the bioplastics monomer furan-2,5-dicarboxylic acid (FDCA) directly from 5-hydroxymethylfurfural (HMF). Furthermore, several CROs could desymmetrize glycerol (a by-product of the biodiesel industry) to D- or L-glyceraldehyde. This study furthers our understanding of CROs by doubling the number of characterized AA5_2 members, which may find future applications as biocatalysts in diverse processes.

Indexed as

PhylogenyAlcohol OxidoreductasesCopperFree RadicalsFungal ProteinsFusariumMetalloproteinsOxidation-ReductionOxidoreductasesProtein ConformationSubstrate Specificityalcohol oxidaseAlcohol OxidoreductasesCoppercopper oxidaseFree RadicalsFungal ProteinsMetalloproteinsOxidoreductasesAlcohol oxidaseAuxiliary Activity Family 5BiocatalysisCopper radical oxidaseGalactose oxidase

Identifiers

PMID34738149
PMCPMC11072238
OpenAlexW3208405595

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.