Evidence map›Paper›PMID 34735569›Full record

ArticleGlycobiology2021

Key role of a structural water molecule for the specificity of 14F7-An antitumor antibody targeting the NeuGc GM3 ganglioside.

Kaare Bjerregaard-Andersen, Fana Abraha, Hedda Johannesen, Stefan Oscarson, Ernesto Moreno, Ute Krengel

Open access · hybridAbstract read
In one paragraph

Article in Glycobiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 5 countries.

Kaare Bjerregaard-AndersenDepartment of Chemistry, University of Oslo, NO-0315 Oslo, Norway.
Fana AbrahaSchool of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland.
Hedda JohannesenDepartment of Chemistry, University of Oslo, NO-0315 Oslo, Norway.
Stefan OscarsonSchool of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland.
Ernesto MorenoFacultad de Ciencias Básicas, Universidad de Medellín, Medellín 050026, Colombia.
Ute KrengelDepartment of Chemistry, University of Oslo, NO-0315 Oslo, Norway.
University College Dublin · IEUniversity of Oslo · NOLundbeck (Denmark) · DKUniversidad de Medellín · CO

Funding

Science Foundation Ireland 08/SRC/B1393
6 · The paper itself

Abstract

Tumor-associated glycolipids such as NeuGc GM3 are auspicious molecular targets in antineoplastic therapies and vaccine strategies. 14F7 is a monoclonal IgG1 with high clinical potential in cancer immunotherapy as it displays extraordinary specificity for NeuGc GM3, while it does not recognize the very similar, ubiquitous NeuAc GM3. Here we present the 2.3 Å crystal structure of the 14F7 antigen-binding domain (14F7 scFv) in complex with the NeuGc GM3 trisaccharide. Modeling analysis and previous mutagenesis data suggest that 14F7 may also bind to an alternative NeuGc GM3 conformation, not observed in the crystal structure. The most intriguing finding, however, was that a water molecule centrally placed in the complementarity-determining region directly mediates the specificity of 14F7 to NeuGc GM3. This has profound impact on the complexity of engineering in the binding site and provides an excellent example of the importance in understanding the water structure in antibody-antigen interactions.

Indexed as

Antibodies, MonoclonalAntibody SpecificityAntigen-Antibody ReactionsAntineoplastic AgentsG(M3) GangliosideModels, MolecularMolecular StructureWaterAntibodies, MonoclonalAntineoplastic AgentsG(M3) GangliosideWatercarbohydrate-antibody interactionsN-glycolyl GM3protein–carbohydrate interactionswater-mediated antibody specificitywater-mediated interactionX-ray crystal structure

Identifiers

PMID34735569
PMCPMC8684480
OpenAlexW3210042546

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.