Evidence map›Paper›PMID 34735457›Full record

ArticlePloS one2021

Identification of heat responsive genes in pea stipules and anthers through transcriptional profiling.

Shaoming Huang, Krishna K Gali, Reddy V B Lachagari, Navajeet Chakravartty, Rosalind A Bueckert, Bunyamin Tar'an, Thomas D Warkentin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Heat stress tolerance in peas (Frontiers in plant science · 2022
    Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Shaoming HuangDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada.
Krishna K GaliDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada.
Reddy V B LachagariAgriGenome Labs Pvt. Ltd., BTIC, MN iHub, Shamirpet, India.
Navajeet ChakravarttyAgriGenome Labs Pvt. Ltd., BTIC, MN iHub, Shamirpet, India.
Rosalind A BueckertDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada.
Bunyamin Tar'anDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada.
Thomas D WarkentinDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada.ORCID 0000-0003-3059-0606
University of Saskatchewan · CASciGenom Labs (India) · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Field pea (Pisum sativum L.), a cool-season legume crop, is known for poor heat tolerance. Our previous work identified PR11-2 and PR11-90 as heat tolerant and susceptible lines in a recombinant inbred population. CDC Amarillo, a Canadian elite pea variety, was considered as another heat tolerant variety based on its similar field performance as PR11-2. This study aimed to characterize the differential transcription. Plants of these three varieties were stressed for 3 h at 38°C prior to self-pollination, and RNAs from heat stressed anthers and stipules on the same flowering node were extracted and sequenced via the Illumina NovaSeq platform for the characterization of heat responsive genes. In silico results were further validated by qPCR assay. Differentially expressed genes (DEGs) were identified at log2 |fold change (FC)| ≥ 2 between high temperature and control temperature, the three varieties shared 588 DEGs which were up-regulated and 220 genes which were down-regulated in anthers when subjected to heat treatment. In stipules, 879 DEGs (463/416 upregulation/downregulation) were consistent among varieties. The above heat-induced genes of the two plant organs were related to several biological processes i.e., response to heat, protein folding and DNA templated transcription. Ten gene ontology (GO) terms were over-represented in the consistently down-regulated DEGs of the two organs, and these terms were mainly related to cell wall macromolecule metabolism, lipid transport, lipid localization, and lipid metabolic processes. GO enrichment analysis on distinct DEGs of individual pea varieties suggested that heat affected biological processes were dynamic, and variety distinct responses provide insight into molecular mechanisms of heat-tolerance response. Several biological processes, e.g., cellular response to DNA damage stimulus in stipule, electron transport chain in anther that were only observed in heat induced PR11-2 and CDC Amarillo, and their relevance to field pea heat tolerance is worth further validation.

Indexed as

FlowersGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantHeat-Shock ResponsePisum sativum

Identifiers

PMID34735457
PMCPMC8568175
OpenAlexW3211227308

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.