Evidence map›Paper›PMID 34734801›Full record

ArticleeLife2021

Cryo-EM structures of CTP synthase filaments reveal mechanism of pH-sensitive assembly during budding yeast starvation.

Jesse M Hansen, Avital Horowitz, Eric M Lynch, Daniel P Farrell, Joel Quispe, Frank DiMaio, Justin M Kollman

Open access · goldAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Chemical reviews · 2026
    Review
  5. Glutamine metabolic enzymes: to filament or not to filament?Biochemical Society transactions · 2026
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Influence ofAnimals : an open access journal from MDPI · 2025
    Article
  12. Cytoophidium complexes resonate with cell fates.Cellular and molecular life sciences : CMLS · 2025
    Article
  13. Structural Basis of Bifunctional CTP/dCTP Synthase.Journal of molecular biology · 2024
    Article
  14. Article
  15. The Impact of Developmental and Metabolic Cues on Cytoophidium Formation.International journal of molecular sciences · 2024
    Review
  16. Differential Cytoophidium Assembly betweenInternational journal of molecular sciences · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jesse M Hansen *Department of Biochemistry, University of Washington, Seattle, United States.ORCID 0000-0001-7967-2085
Avital Horowitz *Department of Biochemistry, University of Washington, Seattle, United States.
Eric M LynchDepartment of Biochemistry, University of Washington, Seattle, United States.ORCID 0000-0001-5897-5167
Daniel P FarrellDepartment of Biochemistry, University of Washington, Seattle, United States.
Joel QuispeDepartment of Biochemistry, University of Washington, Seattle, United States.
Frank DiMaioDepartment of Biochemistry, University of Washington, Seattle, United States.ORCID 0000-0002-7524-8938
Justin M KollmanDepartment of Biochemistry, University of Washington, Seattle, United States.ORCID 0000-0002-0350-5827
University of Washington · US

Funding

TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
The Structure and Function of Metabolic FilamentsR01GM118396 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M · 2016 to 2023
$2.9M
Protein structure determination from low-resolution experimental dataR01GM123089 · NIGMS · UNIVERSITY OF WASHINGTON · PI DIMAIO, FRANK P · 2017 to 2025
$2.6M
Acquisition of a high resolution, high throughput cryo-electron microscopeS10OD023476 · OD · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M · 2017 to 2017
$2.0M
NIGMS NIH HHS R01 GM118396NIGMS NIH HHS R01 GM123089NIGMS NIH HHS T32 GM007270NIH HHS S10 OD023476
6 · The paper itself

Abstract

Many metabolic enzymes self-assemble into micron-scale filaments to organize and regulate metabolism. The appearance of these assemblies often coincides with large metabolic changes as in development, cancer, and stress. Yeast undergo cytoplasmic acidification upon starvation, triggering the assembly of many metabolic enzymes into filaments. However, it is unclear how these filaments assemble at the molecular level and what their role is in the yeast starvation response. CTP Synthase (CTPS) assembles into metabolic filaments across many species. Here, we characterize in vitro polymerization and investigate in vivo consequences of CTPS assembly in yeast. Cryo-EM structures reveal a pH-sensitive assembly mechanism and highly ordered filament bundles that stabilize an inactive state of the enzyme, features unique to yeast CTPS. Disruption of filaments in cells with non-assembly or pH-insensitive mutations decreases growth rate, reflecting the importance of regulated CTPS filament assembly in homeotstasis.

Indexed as

Carbon-Nitrogen LigasesCryoelectron MicroscopyHydrogen-Ion ConcentrationProtein ConformationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCarbon-Nitrogen LigasesCTP synthetaseSaccharomyces cerevisiae Proteinsbiochemistrychemical biologycryo-EMenzyme allosterymetabolic filamentsmolecular biophysicsS. cerevisiaestress responsestructural biology

Identifiers

PMID34734801
PMCPMC8641951
OpenAlexW3210804968

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.