Evidence map›Paper›PMID 34734690›Full record

ArticleACS chemical biology2021

Blinking Fluorescent Probes for Tubulin Nanoscopy in Living and Fixed Cells.

Ru Ta Gerasimaitė, Jonas Bucevičius, Kamila A Kiszka, Sebastian Schnorrenberg, Georgij Kostiuk, Tanja Koenen, Gražvydas Lukinavičius

Open access · hybridAbstract read
In one paragraph

Article in ACS chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
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  7. Journal of microscopy · 2025
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  15. Role of motor proteins in human cancers.Saudi journal of biological sciences · 2022
    Review
  16. Article
  17. Article
  18. At the molecular resolution with MINFLUX?Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ru Ta GerasimaitėChromatin Labeling and Imaging group, Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.ORCID 0000-0003-4898-1496
Jonas BucevičiusChromatin Labeling and Imaging group, Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.ORCID 0000-0001-5725-8940
Kamila A KiszkaDepartment of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.
Sebastian SchnorrenbergEMBL Imaging Centre, EMBL-Heidelberg, Meyerhofstr.1, 69117 Heidelberg, Germany.
Georgij KostiukChromatin Labeling and Imaging group, Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.
Tanja KoenenDepartment of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.
Gražvydas LukinavičiusChromatin Labeling and Imaging group, Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.ORCID 0000-0002-7176-1793
Max Planck Institute for Biophysical Chemistry · DEEuropean Molecular Biology Organization · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here we report a small molecule tubulin probe for single-molecule localization microscopy (SMLM), stimulated emission depletion (STED) microscopy and MINFLUX nanoscopy, which can be used in living and fixed cells. We explored a series of taxane derivatives containing spontaneously blinking far-red dye hydroxymethyl silicon-rhodamine (HMSiR) and found that the linker length profoundly affects the probe permeability and off-targeting in living cells. The best performing probe, HMSiR-tubulin, is composed of cabazitaxel and the 6'-regioisomer of HMSiR bridged by a C6 linker. Microtubule diameter of ≤50 nm was routinely measured in SMLM experiments on living and fixed cells. HMSiR-tubulin allows a complementary use of different nanoscopy techniques for investigating microtubule functions and developing imaging methods. For the first time, we resolved the inner microtubule diameter of 16 ± 5 nm by optical nanoscopy and thereby demonstrated the utility of a self-blinking dye for MINFLUX imaging.

Indexed as

Cell Line, TumorFluorescent DyesHumansMicroscopyMicrotubulesMolecular StructureOsteosarcomaRhodaminesSingle-Cell AnalysisSingle Molecule ImagingTaxoidsTubulincabazitaxelFluorescent DyesRhodaminesTaxoidsTubulin

Identifiers

PMID34734690
PMCPMC8609524
OpenAlexW3209057901

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.