Evidence map›Paper›PMID 34732400›Full record

Trial reportBMJ (Clinical research ed.)2021

Use of whole genome sequencing to determine genetic basis of suspected mitochondrial disorders: cohort study.

Katherine R Schon, Rita Horvath, Wei Wei, Claudia Calabrese, Arianna Tucci, Kristina Ibañez, Thiloka Ratnaike, Robert D S Pitceathly, Enrico Bugiardini, Rosaline Quinlivan and 21 more

Open access · hybridAbstract readClinical Trial
In one paragraph

Trial report in BMJ (Clinical research ed.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it, 85 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Article
  6. Mainstreaming genomic testing for mitochondrial disease in Australia.European journal of human genetics : EJHG · 2026
    Article
  7. Cooperative Architecture of Mitochondrial Proteome Homeostasis.medRxiv : the preprint server for health sciences · 2026
    Article
  8. Identification of Intronic Variants inNeurology. Genetics · 2026
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. De NovoInternational journal of molecular sciences · 2025
    Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 12 institutions in 2 countries.

Katherine R SchonDepartment of Clinical Neurosciences, School of Clinical Medicine, University of Cambridge, Cambridge, UK.ORCID 0000-0001-8054-8954
Rita HorvathDepartment of Clinical Neurosciences, School of Clinical Medicine, University of Cambridge, Cambridge, UK.
Wei WeiDepartment of Clinical Neurosciences, School of Clinical Medicine, University of Cambridge, Cambridge, UK.
Claudia CalabreseDepartment of Clinical Neurosciences, School of Clinical Medicine, University of Cambridge, Cambridge, UK.
Arianna TucciWilliam Harvey Research Institute, Queen Mary University of London, London, UK.
Kristina IbañezWilliam Harvey Research Institute, Queen Mary University of London, London, UK.
Thiloka RatnaikeDepartment of Clinical Neurosciences, School of Clinical Medicine, University of Cambridge, Cambridge, UK.
Robert D S PitceathlyDepartment of Neuromuscular Diseases, UCL Queen Square Institute of Neurology and The National Hospital for Neurology and Neurosurgery, London, UK.
Enrico BugiardiniDepartment of Neuromuscular Diseases, UCL Queen Square Institute of Neurology and The National Hospital for Neurology and Neurosurgery, London, UK.
Rosaline QuinlivanDepartment of Neuromuscular Diseases, UCL Queen Square Institute of Neurology and The National Hospital for Neurology and Neurosurgery, London, UK.
Michael G HannaDepartment of Neuromuscular Diseases, UCL Queen Square Institute of Neurology and The National Hospital for Neurology and Neurosurgery, London, UK.
Emma ClementDepartment of Clinical Genetics and Genomic Medicine, Great Ormond Street Hospital for Children NHS Foundation Trust, London, UK.
Emma AshtonNHS North Thames Genomic Laboratory Hub, Great Ormond Street Hospital for Children NHS Foundation Trust, London, UK.
John A SayerTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
Paul BrennanNorthern Genetics Service, Newcastle Hospitals NHS Foundation Trust, International Centre for Life, Newcastle upon Tyne, UK.
Dragana JosifovaDepartment of Clinical Genetics, Guy's and St Thomas' NHS Foundation Trust, London, UK.
Louise IzattDepartment of Clinical Genetics, Guy's and St Thomas' NHS Foundation Trust, London, UK.
Carl FratterNHS Highly Specialised Services for Rare Mitochondrial Disorders - Oxford Centre, Oxford University Hospitals NHS Foundation Trust, Oxford, UK.
Victoria NesbittNHS Highly Specialised Services for Rare Mitochondrial Disorders - Oxford Centre, Oxford University Hospitals NHS Foundation Trust, Oxford, UK.
Timothy BarrettCentral and South Genome Medicine Service Alliance and Genomics Laboratory Hub, Birmingham Women's and Children's NHS Foundation Trust, Birmingham, UK.
Dominic J McMullenCentral and South Genome Medicine Service Alliance and Genomics Laboratory Hub, Birmingham Women's and Children's NHS Foundation Trust, Birmingham, UK.
Audrey SmithManchester Centre for Genomic Medicine, St Mary's Hospital, Manchester, UK.
Charulata DeshpandeDepartment of Clinical Genetics, Guy's and St Thomas' NHS Foundation Trust, London, UK.
Sarah F SmithsonDepartment of Brain Sciences, London Institute of Medical Sciences, Mansfield Centre for Inovation, Imperial College, Hammersmith Hospital, London, UK.
Richard Festenstein
Natalie CanhamLiverpool Centre for Genomic Medicine, Liverpool Women's Hospital, Liverpool, UK.
Mark CaulfieldGenomics England, William Harvey Research Institute, Queen Mary University of London, London, UK.
Henry HouldenDepartment of Neuromuscular Diseases, UCL Queen Square Institute of Neurology and The National Hospital for Neurology and Neurosurgery, London, UK.ORCID 0000-0002-2866-7777
Shamima RahmanNeurology and Mitochondrial Disorders Genomics Clinical Interpretation Partnership, William Harvey Research Institute, Queen Mary University of London, London, UK.ORCID 0000-0003-2088-730X
Patrick F ChinneryDepartment of Clinical Neurosciences, School of Clinical Medicine, University of Cambridge, Cambridge, UK.ORCID 0000-0002-7065-6617
Genomics England Research Consortium
Queen Mary University of London · GBUniversity of Cambridge · GBNational Hospital for Neurology and Neurosurgery · GBGuy's and St Thomas' NHS Foundation Trust · GBBirmingham Women’s and Children’s NHS Foundation Trust · GBGreat Ormond Street Hospital for Children NHS Foundation Trust · GBHammersmith Hospital · GBOxford University Hospitals NHS Trust · GBCentre for Life · GBNewcastle University · GBSt Mary's Hospital · GBUniversity of Liverpool · GB

Funding

Medical Research Council G1000848Medical Research Council MC_EX_MR/M009203/1Medical Research Council MC_PC_14089Medical Research Council MC_UU_00015/9Medical Research Council MR/M009203/1Medical Research Council MR/N010035/1Medical Research Council MR/N025431/1Medical Research Council MR/N025431/2Medical Research Council MR/S002065/1Medical Research Council MR/S005021/1Medical Research Council MR/S006753/1Medical Research Council MR/S035699/1Medical Research Council MR/V009346/1Wellcome Trust
6 · The paper itself

Abstract

objectiveTo determine whether whole genome sequencing can be used to define the molecular basis of suspected mitochondrial disease.

designCohort study.

settingNational Health Service, England, including secondary and tertiary care.

participants345 patients with suspected mitochondrial disorders recruited to the 100 000 Genomes Project in England between 2015 and 2018.

interventionShort read whole genome sequencing was performed. Nuclear variants were prioritised on the basis of gene panels chosen according to phenotypes, ClinVar pathogenic/likely pathogenic variants, and the top 10 prioritised variants from Exomiser. Mitochondrial DNA variants were called using an in-house pipeline and compared with a list of pathogenic variants. Copy number variants and short tandem repeats for 13 neurological disorders were also analysed. American College of Medical Genetics guidelines were followed for classification of variants.

main outcome measureDefinite or probable genetic diagnosis.

resultsA definite or probable genetic diagnosis was identified in 98/319 (31%) families, with an additional 6 (2%) possible diagnoses. Fourteen of the diagnoses (4% of the 319 families) explained only part of the clinical features. A total of 95 different genes were implicated. Of 104 families given a diagnosis, 39 (38%) had a mitochondrial diagnosis and 65 (63%) had a non-mitochondrial diagnosis.

conclusionWhole genome sequencing is a useful diagnostic test in patients with suspected mitochondrial disorders, yielding a diagnosis in a further 31% after exclusion of common causes. Most diagnoses were non-mitochondrial disorders and included developmental disorders with intellectual disability, epileptic encephalopathies, other metabolic disorders, cardiomyopathies, and leukodystrophies. These would have been missed if a targeted approach was taken, and some have specific treatments.

Indexed as

Whole Genome SequencingAdolescentAdultAgedAged, 80 and overChildChild, PreschoolDNA, MitochondrialFemaleFollow-Up StudiesGenetic MarkersGenetic TestingHumansInfantInfant, NewbornMaleDNA, MitochondrialGenetic Markers

Identifiers

PMID34732400
PMCPMC8565085
OpenAlexW3206822721

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.