Evidence map›Paper›PMID 34732265›Full record

ArticleHereditas2021

Enhancer analysis of the Drosophila zinc finger transcription factor Earmuff by gene targeting.

Kirsten Hildebrandt, Sabrina Kübel, Marie Minet, Nora Fürst, Christine Klöppel, Eva Steinmetz, Uwe Walldorf

Open access · goldAbstract read
In one paragraph

Article in Hereditas, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kirsten Hildebrandt *Developmental Biology, Saarland University, Building 61, 66421, Homburg/Saar, Germany.
Sabrina Kübel *Developmental Biology, Saarland University, Building 61, 66421, Homburg/Saar, Germany.
Marie MinetDevelopmental Biology, Saarland University, Building 61, 66421, Homburg/Saar, Germany.
Nora FürstDevelopmental Biology, Saarland University, Building 61, 66421, Homburg/Saar, Germany.
Christine KlöppelDevelopmental Biology, Saarland University, Building 61, 66421, Homburg/Saar, Germany.
Eva SteinmetzDevelopmental Biology, Saarland University, Building 61, 66421, Homburg/Saar, Germany.
Uwe WalldorfDevelopmental Biology, Saarland University, Building 61, 66421, Homburg/Saar, Germany. uwe.walldorf@uks.eu.ORCID http://orcid.org/0000-0002-3989-4844
Saarland University · DEFriedrich-Alexander-Universität Erlangen-Nürnberg · DE

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
NIH HHS P40 OD018537
6 · The paper itself

Abstract

backgroundMany transcription factors are involved in the formation of the brain during the development of Drosophila melanogaster. The transcription factor Earmuff (Erm), a member of the forebrain embryonic zinc finger family (Fezf), is one of these important factors for brain development. One major function of Earmuff is the regulation of proliferation within type II neuroblast lineages in the brain; here, Earmuff is expressed in intermediate neural progenitor cells (INPs) and balances neuronal differentiation versus stem cell maintenance. Erm expression during development is regulated by several enhancers.

resultsIn this work we show a functional analysis of erm and some of its enhancers. We generated a new erm mutant allele by gene targeting and reintegrated Gal4 to make an erm enhancer trap strain that could also be used on an erm mutant background. The deletion of three of the previously analysed enhancers showing the most prominent expression patterns of erm by gene targeting resulted in specific temporal and spatial defects in defined brain structures. These defects were already known but here could be assigned to specific enhancer regions.

conclusionThis analysis is to our knowledge the first systematic analysis of several large enhancer deletions of a Drosophila gene by gene targeting and will enable deeper analysis of erm enhancer functions in the future.

Indexed as

Drosophila melanogasterDrosophila ProteinsAnimalsEnhancer Elements, GeneticGene Expression Regulation, DevelopmentalGene TargetingTranscription FactorsZinc FingersDrosophila Proteinserm protein, DrosophilaTranscription FactorsEarmuff (Erm)EnhancerGene targetingTranscription factor

Identifiers

PMID34732265
PMCPMC8567707
OpenAlexW3208968910

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.