Evidence map›Paper›PMID 34731299›Full record

ArticleJournal of molecular modeling2021

In silico characterization, docking, and simulations to understand host-pathogen interactions in an effort to enhance crop production in date palms.

Meshari Alazmi, N Alshammari, Naimah A Alanazi, Abdel Moneim E Sulieman

Abstract read
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Article in Journal of molecular modeling, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Meshari AlazmiDepartment of Information and Computer Science, College of Computer Science and Engineering, University of Ha'il, P.O. Box 2440, Ha'il, 81411, Saudi Arabia. ms.alazmi@uoh.edu.sa.ORCID http://orcid.org/0000-0001-9074-1029
N AlshammariDepartment of Biology, College of Sciences, University of Ha'il, P.O. Box 2440, Ha'il, 81411, Saudi Arabia.
Naimah A AlanaziDepartment of Biology, College of Sciences, University of Ha'il, P.O. Box 2440, Ha'il, 81411, Saudi Arabia.
Abdel Moneim E SuliemanDepartment of Biology, College of Sciences, University of Ha'il, P.O. Box 2440, Ha'il, 81411, Saudi Arabia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Food safety remains a significant challenge despite the growth and development in agricultural research and the advent of modern biotechnological and agricultural tools. Though the agriculturist struggles to aid the growing population's needs, many pathogen-based plant diseases by their direct impact on cell division and tissue development have led to the loss of tons of food crops every year. Though there are many conventional and traditional methods to overcome this issue, the amount and time spend are huge. Scientists have developed systems biology tools to study the root cause of the problem and rectify it. Host-pathogen protein interactions (HPIs) have a promising role in identifying the pathogens' strategy to conquer the host organism. In this paper, the interactions between the host Rhynchophorus ferrugineus (an invasive wood-boring pest that destroys palm) and the pathogens Proteus mirabilis, Serratia marcescens, and Klebsiella pneumoniae are comprehensively studied using protein-protein interactions, molecular docking, and followed by 200 ns molecular dynamic simulations. This study elucidates the structural and functional basis of these proteins leading towards better plant health, production, and reliability.

Indexed as

Crop ProductionCrops, AgriculturalFood SafetyHost-Pathogen InteractionsHumansKlebsiella pneumoniaeMolecular Dynamics SimulationPhoeniceaeProtein Interaction MapsProteus mirabilisSerratia marcescensDate palmHost–pathogenMolecular dockingMolecular dynamicsProtein–protein interactionsRed palm weevil

Identifiers

PMID34731299

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.