Evidence map›Paper›PMID 34731210›Full record

ArticlePloS one2021

The chitinolytic activity of the Curtobacterium sp. isolated from field-grown soybean and analysis of its genome sequence.

Ivica Dimkić, Vibha Bhardwaj, Valeria Carpentieri-Pipolo, Nemanja Kuzmanović, Giuliano Degrassi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  5. Review
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  7. Article
  8. Draft Genome Sequence ofMicrobiology resource announcements · 2022
    Article
  9. Current issues in molecular biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 4 countries.

Ivica DimkićDepartment of Biochemistry and Molecular Biology, University of Belgrade - Faculty of Biology, Belgrade, Serbia.ORCID 0000-0002-0425-5938
Vibha BhardwajRas Al Khaimah Municipality Department, Director Environment Laboratories, Dubai, United Arab Emirates.
Valeria Carpentieri-PipoloEmbrapa Trigo, Passo Fundo, Rio Grande do Sul, Brazil.ORCID 0000-0003-0443-2436
Nemanja KuzmanovićFederal Research Centre for Cultivated Plants (JKI), Institute for Plant Protection in Horticulture and Forests, Julius Kühn-Institut, Braunschweig, Germany.
Giuliano DegrassiIndustrial Biotechnology Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), Buenos Aires, Argentina.
American University of Ras Al Khaimah · AEFundação de Amparo à Pesquisa do Estado do Rio Grande do Sul · BRJulius Kühn-Institut · DEUniversity of Belgrade · RS

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Curtobacterium sp. GD1 was isolated from leaves of conventionally grown soybean in Brazil. It was noteworthy that among all bacteria previously isolated from the same origin, only Curtobacterium sp. GD1 showed a strong chitinase activity. The enzyme was secreted and its production was induced by the presence of colloidal chitin in the medium. The chitinase was partially purified and characterized: molecular weight was approximately 37 kDa and specific activity 90.8 U/mg. Furthermore, Curtobacterium sp. GD1 genome was sequenced and analyzed. Our isolate formed a phylogenetic cluster with four other Curtobacterium spp. strains, with ANIb/ANIm ≥ 98%, representing a new, still non described Curtobacterium species. The circular genome visualization and comparison of genome sequences of strains forming new cluster indicated that most regions within their genomes were highly conserved. The gene associated with chitinase production was identified and the distribution pattern of glycosyl hydrolases genes was assessed. Also, genes associated with catabolism of structural carbohydrates such as oligosaccharides, mixed polysaccharides, plant and animal polysaccharides, as well as genes or gene clusters associated with resistance to antibiotics, toxic compounds and auxin biosynthesis subsystem products were identified. The abundance of putative glycosyl hydrolases in the genome of Curtobacterium sp. GD1 suggests that it has the tools for the hydrolysis of different polysaccharides. Therefore, Curtobacterium sp. GD1 isolated from soybean might be a bioremediator, biocontrol agent, an elicitor of the plant defense responses or simply degrader.

Indexed as

ActinobacteriaBacterial ProteinsChitinChitinasesGenome, BacterialGlycine maxHigh-Throughput Nucleotide SequencingHydrolysisN-Glycosyl HydrolasesPhylogenyPlant LeavesWhole Genome SequencingBacterial ProteinsChitinChitinasesN-Glycosyl Hydrolases

Identifiers

PMID34731210
PMCPMC8565777
OpenAlexW3208758560

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.