Evidence map›Paper›PMID 34731056›Full record

ArticleApplied and environmental microbiology2022

Transporter Gene-Mediated Typing for Detection and Genome Mining of Lipopeptide-Producing Pseudomonas.

Léa Girard, Niels Geudens, Brent Pauwels, Monica Höfte, José C Martins, René De Mot

Open access · hybridAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Multiple Pathways Impact Swarming Motility ofbioRxiv : the preprint server for biology · 2024
    Article
  5. Does regulation hold the key to optimizing lipopeptide production inFrontiers in bioengineering and biotechnology · 2024
    Review
  6. Article
  7. An antibiotic produced byFrontiers in microbiology · 2023
    Article
  8. Review
  9. Review
  10. Molecules (Basel, Switzerland) · 2022
    Review
  11. Versatile role ofFrontiers in plant science · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Léa GirardCentre of Microbial and Plant Genetics, Faculty of Bioscience Engineering, KU Leuvengrid.5596.f, Heverlee-Leuven, Belgium.ORCID 0000-0002-2163-5924
Niels GeudensNMR and Structure Analysis Unit, Department of Organic and Macromolecular Chemistry, Faculty of Science, Ghent University, Ghent, Belgium.ORCID 0000-0003-0459-7142
Brent PauwelsCentre of Microbial and Plant Genetics, Faculty of Bioscience Engineering, KU Leuvengrid.5596.f, Heverlee-Leuven, Belgium.
Monica HöfteLaboratory of Phytopathology, Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.ORCID 0000-0002-0850-3249
José C MartinsNMR and Structure Analysis Unit, Department of Organic and Macromolecular Chemistry, Faculty of Science, Ghent University, Ghent, Belgium.ORCID 0000-0001-7350-2253
René De MotCentre of Microbial and Plant Genetics, Faculty of Bioscience Engineering, KU Leuvengrid.5596.f, Heverlee-Leuven, Belgium.ORCID 0000-0002-0030-9441
Ghent University · BEKU Leuven · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudomonas lipopeptides (LPs) are involved in diverse ecological functions and have biotechnological application potential associated with their antimicrobial and/or antiproliferative activities. They are synthesized by multimodular nonribosomal peptide synthetases which, together with transport and regulatory proteins, are encoded by large biosynthetic gene clusters (BGCs). These secondary metabolites are classified in distinct families based on the sequence and length of the oligopeptide and size of the macrocycle, if present. The phylogeny of PleB, the MacB-like transporter that is part of a dedicated ATP-dependent tripartite efflux system driving export of Pseudomonas LPs, revealed a strong correlation with LP chemical diversity. As each LP BGC carries its cognate

Indexed as

LipopeptidesPseudomonasAntarctic RegionsHumansMultigene FamilyPhylogenyRhizosphereLipopeptidesABC transporterbiosynthetic gene clusterssecondary metabolites

Identifiers

PMID34731056
PMCPMC8788793
OpenAlexW3209913011

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.