Evidence map›Paper›PMID 34728633›Full record

ArticleNature communications2021

Molecular programs of fibrotic change in aging human lung.

Seoyeon Lee, Mohammad Naimul Islam, Kaveh Boostanpour, Dvir Aran, Guangchun Jin, Stephanie Christenson, Michael A Matthay, Walter L Eckalbar, Daryle J DePianto, Joseph R Arron and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 1 pooled it
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 1 synthesis or guideline pooled it, 73 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Mitochondrial-derived microproteins in lung disease: insights and implications.American journal of physiology. Lung cellular and molecular physiology · 2026
    Review
  9. Article
  10. Article
  11. Article
  12. Cellular plasticity and regenerative mechanisms in the lung.European respiratory review : an official journal of the European Respiratory Society · 2026
    Review
  13. Article
  14. Biomarkers of ageing of humans and non-human primates.Nature reviews. Molecular cell biology · 2025
    Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 2 countries.

Seoyeon Lee *Department of Medicine, Division of Pulmonary, Critical Care, Allergy, and Sleep, University of California, San Francisco, CA, USA.ORCID 0000-0003-3158-9666
Mohammad Naimul Islam *Lung Biology Laboratory, Department of Medicine, Division of Pulmonary, Allergy, and Critical Care Medicine, Vagelos College of Physicians and Surgeons of Columbia University, New York, NY, USA.ORCID 0000-0001-7929-9444
Kaveh BoostanpourDepartment of Medicine, Division of Pulmonary, Critical Care, Allergy, and Sleep, University of California, San Francisco, CA, USA.
Dvir AranLorry I. Lokey Interdisciplinary Center for Life Sciences & Engineering, Technion Israel Institute of Technology, Haifa, Israel.ORCID 0000-0001-6334-5039
Guangchun JinLung Biology Laboratory, Department of Medicine, Division of Pulmonary, Allergy, and Critical Care Medicine, Vagelos College of Physicians and Surgeons of Columbia University, New York, NY, USA.
Stephanie ChristensonDepartment of Medicine, Division of Pulmonary, Critical Care, Allergy, and Sleep, University of California, San Francisco, CA, USA.
Michael A MatthayDepartment of Medicine, Division of Pulmonary, Critical Care, Allergy, and Sleep, University of California, San Francisco, CA, USA.ORCID 0000-0003-3039-8155
Walter L EckalbarDepartment of Medicine, Division of Pulmonary, Critical Care, Allergy, and Sleep, University of California, San Francisco, CA, USA.
Daryle J DePiantoGenentech Research and Early Development, Genentech, Inc., South San Francisco, CA, USA.
Joseph R ArronGenentech Research and Early Development, Genentech, Inc., South San Francisco, CA, USA.ORCID 0000-0001-7677-9979
Liam MageeDepartment of Medicine, Division of Pulmonary, Critical Care, Allergy, and Sleep, University of California, San Francisco, CA, USA.
Sunita BhattacharyaLung Biology Laboratory, Department of Medicine, Division of Pulmonary, Allergy, and Critical Care Medicine, Vagelos College of Physicians and Surgeons of Columbia University, New York, NY, USA.
Rei MatsumotoDepartment of Surgery, Vagelos College of Physicians and Surgeons of Columbia University, New York, NY, USA.
Masaru KubotaDepartment of Surgery, Vagelos College of Physicians and Surgeons of Columbia University, New York, NY, USA.
Donna L FarberDepartment of Surgery, Vagelos College of Physicians and Surgeons of Columbia University, New York, NY, USA.ORCID 0000-0001-8236-9183
Jahar Bhattacharya *Lung Biology Laboratory, Department of Medicine, Division of Pulmonary, Allergy, and Critical Care Medicine, Vagelos College of Physicians and Surgeons of Columbia University, New York, NY, USA. jb39@columbia.edu.ORCID 0000-0002-5588-6211
Paul J Wolters *Department of Medicine, Division of Pulmonary, Critical Care, Allergy, and Sleep, University of California, San Francisco, CA, USA. paul.wolters@ucsf.edu.ORCID 0000-0002-3108-6164
Mallar Bhattacharya *Department of Medicine, Division of Pulmonary, Critical Care, Allergy, and Sleep, University of California, San Francisco, CA, USA. mallar.bhattacharya@ucsf.edu.ORCID 0000-0002-5439-547X
University of California, San Francisco · USColumbia University · USTechnion – Israel Institute of Technology · IL

Funding

OPTICAL IMAGING OF MESENCHYMAL STEM CELL INTERACTIONS WITH LUNG MICROVESSELSR01HL057556 · NHLBI · ST. LUKE'S-ROOSEVELT INST FOR HLTH SCIS · PI BHATTACHARYA, JAHAR · 1997 to 2020
$8.0M
MICROPUNCTURE STUDIES OF LUNG, WATER AND SOLUTE EXCHANGER01HL036024 · NHLBI · ST. LUKE'S-ROOSEVELT INST FOR HLTH SCIS · PI BHATTACHARYA, JAHAR · 1985 to 2025
$7.0M
Lung Remodeling Mediated by Telomere Dysfunction in Alveolar Type II CellsR01HL139897 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Paul j WOLTERS · 2018 to 2026
$5.5M
MICROPUNCTURE STUDIES OF LUNG WATER SOLUTE EXCHANGER37HL036024 · NHLBI · ST. LUKE'S-ROOSEVELT INST FOR HLTH SCIS · PI BHATTACHARYA, JAHAR · 1998 to 2007
$3.0M
Immunobiology and alveolar physiology of the aging lungU01HL145547 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BHATTACHARYA, JAHAR, FARBER, DONNA L. · 2019 to 2022
$2.6M
The Regulation of RhoA Activation in Airway Smooth MuscleR01HL131560 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BHATTACHARYA, MALLAR · 2016 to 2020
$1.9M
Genetic variation impacting the airway smooth muscle in children with asthmaR00HL135403 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ECKALBAR, WALTER · 2020 to 2022
$747k
NHLBI NIH HHS R00 HL135403NHLBI NIH HHS R01 HL036024NHLBI NIH HHS R01 HL057556NHLBI NIH HHS R01 HL131560NHLBI NIH HHS R01 HL139897NHLBI NIH HHS R37 HL036024NHLBI NIH HHS U01 HL145547
6 · The paper itself

Abstract

Lung fibrosis is increasingly detected with aging and has been associated with poor outcomes in acute lung injury or infection. However, the molecular programs driving this pro-fibrotic evolution are unclear. Here we profile distal lung samples from healthy human donors across the lifespan. Gene expression profiling by bulk RNAseq reveals both increasing cellular senescence and pro-fibrotic pathway activation with age. Quantitation of telomere length shows progressive shortening with age, which is associated with DNA damage foci and cellular senescence. Cell type deconvolution analysis of the RNAseq data indicates a progressive loss of lung epithelial cells and an increasing proportion of fibroblasts with age. Consistent with this pro-fibrotic profile, second harmonic imaging of aged lungs demonstrates increased density of interstitial collagen as well as decreased alveolar expansion and surfactant secretion. In this work, we reveal the transcriptional and structural features of fibrosis and associated functional impairment in normal lung aging.

Indexed as

Gene Expression RegulationTelomere ShorteningAdolescentAdultAgedAge FactorsCellular SenescenceCohort StudiesCollagenCyclin-Dependent Kinase Inhibitor p16Epithelial CellsFemaleFibroblastsHumansIdiopathic Pulmonary FibrosisLungCDKN2A protein, humanCollagenCyclin-Dependent Kinase Inhibitor p16TP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID34728633
PMCPMC8563941
OpenAlexW3208599634

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.