Evidence map›Paper›PMID 34728343›Full record

ArticleInternational journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases2022

Identifying Epstein-Barr virus peptide sequences associated with differential IgG antibody response.

Anna E Coghill, Jianwen Fang, Zhiwei Liu, Chien-Jen Chen, Ruth F Jarrett, Henrik Hjalgrim, Carla Proietti, Kelly J Yu, Wan-Lun Hsu, Pei-Jen Lou and 4 more

Open access · goldAbstract read
In one paragraph

Article in International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 8 institutions in 5 countries.

Anna E CoghillDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland, USA; Cancer Epidemiology Program, H. Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA. Electronic address: anna.coghill@moffitt.org.
Jianwen FangBiometric Research Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, Rockville, Maryland, USA.
Zhiwei LiuDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland, USA.
Chien-Jen ChenGenomics Research Centre, Academica Sinica, Taipei, Taiwan.
Ruth F JarrettMRC-University of Glasgow Centre for Virus Research, Glasgow, UK.
Henrik HjalgrimStatens Serum Institut, Copenhagen, Denmark; Department of Haematology, Rigshospitalet, Copenhagen, Denmark.
Carla ProiettiAustralian Institute of Tropical Health and Medicine, James Cook University, Cairns, Australia.
Kelly J YuDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland, USA.
Wan-Lun HsuGenomics Research Centre, Academica Sinica, Taipei, Taiwan; College of Public Health, National Taiwan University, Taipei, Taiwan.
Pei-Jen LouDepartment of Otolaryngology, National Taiwan University Hospital and College of Medicine, Taipei, Taiwan.
Chen-Ping WangDepartment of Otolaryngology, National Taiwan University Hospital and College of Medicine, Taipei, Taiwan.
Yingdong ZhaoBiometric Research Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, Rockville, Maryland, USA.
Denise L DoolanAustralian Institute of Tropical Health and Medicine, James Cook University, Cairns, Australia.
Allan HildesheimDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland, USA.
National Cancer Institute · USAustralian Institute of Tropical Health and Medicine · AUNational Taiwan University Hospital · TWGenomics Research Center, Academia Sinica · TWMoffitt Cancer Center · USMRC University of Glasgow Centre for Virus Research · GBNational Taiwan University · TWStatens Serum Institut · DK

Funding

Viral and Host Factors Associated with NPCZIACP010211 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI ENGELS, ERIC A · 2010 to 2025
$6.1M
HIV Genomic Aging Project in Oncology (HIV-GAP)R01CA268973 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI COGHILL, ANNA, GILLIS, NANCY · 2021 to 2025
$3.8M
NCI NIH HHS R01 CA268973
6 · The paper itself

Abstract

backgroundEpstein-Barr virus (EBV) infection contributes to cancers in a fraction of seropositive individuals, but much remains to be learned about variation in EBV-directed humoral immunity in cancer-free adults.

methodsA protein microarray was used to probe serum from 175 Taiwanese and 141 Northern European adults for immunoglobulin G (IgG) antibody responses to 115 different peptide sequences, representing protein segments or protein variants, from 45 EBV proteins. It was posited that this antibody-based approach could identify EBV peptide sequences representing immunodominant regions relevant for B-cell immunity.

resultsAnalyses of 45 EBV proteins with multiple protein segments or variants printed on the array identified eight EBV peptide sequences that appear to play a role in immunogenicity. This included: (1) three proteins with segments/regions associated with IgG reactivity (BALF5, LMP1, LMP2A); and (2) five proteins with sequence variants/amino acid changes associated with IgG reactivity (BDLF4, EBNA3A, EBNA3B, EBNA-LP, LF1).

conclusionThis examination of IgG antibody responses against 115 EBV peptide sequences in 316 cancer-free adults represents an important step toward identifying specific EBV protein sequences that play a role in generating B-cell immunity in humans.

Indexed as

Epstein-Barr Virus InfectionsHerpesvirus 4, HumanAntibody FormationB-LymphocytesHumansImmunoglobulin GImmunoglobulin GEBNA proteinEpstein–Barr virusIgG antibody arrayLMP1/2

Identifiers

PMID34728343
PMCPMC8724419
OpenAlexW3208806264

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.