Evidence map›Paper›PMID 34727153›Full record

ArticleInvestigative ophthalmology & visual science2021

ERAP1, ERAP2, and Two Copies of HLA-Aw19 Alleles Increase the Risk for Birdshot Chorioretinopathy in HLA-A29 Carriers.

Sahar Gelfman, Dominique Monnet, Ann J Ligocki, Thierry Tabary, Arden Moscati, Xiaodong Bai, Jan Freudenberg, Blerta Cooper, Jack A Kosmicki, Sarah Wolf and 10 more

Open access · goldAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
  2. Exploring the Involvement ofLife (Basel, Switzerland) · 2026
    Review
  3. Observational
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Single-cell profiling identifies a CD8Nature communications · 2024
    Article
  10. Article
  11. Article
  12. Review
  13. Some practical issues about HLA-A29 in birdshot retinochoroiditis.Journal of ophthalmic inflammation and infection · 2023
    Article
  14. Birdshot Chorioretinopathy: A Review.Journal of clinical medicine · 2022
    Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 2 countries.

Sahar GelfmanRegeneron Genetics Center, Tarrytown, New York, United States.
Dominique MonnetUniversité de Paris, Hôpital Cochin, service d'ophtalmologie, Paris, France.
Ann J LigockiRegeneron Pharmaceuticals, Tarrytown, New York, United States.
Thierry TabaryUniversity of Reims Champagne Ardennes, Reims, France.
Arden MoscatiRegeneron Genetics Center, Tarrytown, New York, United States.
Xiaodong BaiRegeneron Genetics Center, Tarrytown, New York, United States.
Jan FreudenbergRegeneron Genetics Center, Tarrytown, New York, United States.
Blerta CooperRegeneron Pharmaceuticals, Tarrytown, New York, United States.
Jack A KosmickiRegeneron Genetics Center, Tarrytown, New York, United States.
Sarah WolfRegeneron Genetics Center, Tarrytown, New York, United States.
Manuel A R FerreiraRegeneron Genetics Center, Tarrytown, New York, United States.
John OvertonRegeneron Genetics Center, Tarrytown, New York, United States.
Jonathan WeyneRegeneron Pharmaceuticals, Tarrytown, New York, United States.
Eli A StahlRegeneron Genetics Center, Tarrytown, New York, United States.
Aris BarasRegeneron Genetics Center, Tarrytown, New York, United States.
Carmelo RomanoRegeneron Pharmaceuticals, Tarrytown, New York, United States.
Jacques H M CohenUniversity of Reims Champagne Ardennes, Reims, France.
Giovanni CoppolaRegeneron Genetics Center, Tarrytown, New York, United States.
Antoine BrézinUniversité de Paris, Hôpital Cochin, service d'ophtalmologie, Paris, France.
Regeneron Genetics Center
Regeneron (United States) · USUniversité de Reims Champagne-Ardenne · FRHôpital Cochin · FRUniversité Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: Birdshot chorioretinopathy (BSCR) is strongly associated with HLA-A29. This study was designed to elucidate the genetic modifiers of BSCR in HLA-A29 carriers. Methods: We sequenced the largest BSCR cohort to date, including 286 cases and 108 HLA-A29-positive controls to determine genome-wide common and rare variant associations. We further typed the HLA alleles of cases and 45,386 HLA-A29 controls of European ancestry to identify HLA alleles that associate with BSCR risk. Results: Carrying a second allele that belongs to the HLA-Aw19 broad antigen family (including HLA-A29, -A30, -A31, and -A33) increases the risk for BSCR (odds ratio [OR] = 4.44; P = 2.2e-03). This result was validated by comparing allele frequencies to large HLA-A29-controlled cohorts (n = 45,386; OR > 2.5; P < 1.3e-06). We also confirm that ERAP1 and ERAP2 haplotypes modulate disease risk. A meta-analysis with an independent dataset confirmed that ERAP1 and ERAP2 haplotypes modulate the risk for disease at a genome-wide significant level: ERAP1-rs27432 (OR = 2.46; 95% confidence interval [CI], 1.85-3.26; P = 4.07e-10), an expression quantitative trait locus (eQTL) decreasing ERAP1 expression; and ERAP2-rs10044354 (OR = 1.95; 95% CI, 1.55-2.44; P = 6.2e-09), an eQTL increasing ERAP2 expression. Furthermore, ERAP2-rs2248374 that disrupts ERAP2 expression is protective (OR = 0.56; 95% CI, 0.45-0.70; P = 2.39e-07). BSCR risk is additively increased when combining ERAP1/ERAP2 risk genotypes with two copies of HLA-Aw19 alleles (OR = 13.53; 95% CI, 3.79-54.77; P = 1.17e-05). Conclusions: The genetic factors increasing BSCR risk demonstrate a pattern of increased processing, as well as increased presentation of ERAP2-specific peptides. This suggests a mechanism in which exceeding a peptide presentation threshold activates the immune response in choroids of A29 carriers.

Indexed as

Polymorphism, Single NucleotideAllelesAminopeptidasesBirdshot ChorioretinopathyGene FrequencyGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotyping TechniquesHaplotypesHeterozygoteHLA-A AntigensHumansMinor Histocompatibility AntigensMultiplex Polymerase Chain ReactionOdds RatioRisk FactorsAminopeptidasesERAP1 protein, humanERAP2 protein, humanHLA-A19 antigenHLA-A29 antigenHLA-A AntigensMinor Histocompatibility Antigens

Identifiers

PMID34727153
PMCPMC8572510
OpenAlexW3210854881

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.