Evidence map›Paper›PMID 34726730›Full record

ArticleThe Journal of experimental medicine2021

The histone demethylase Lsd1 regulates multiple repressive gene programs during T cell development.

Daniel B Stamos, Lauren M Clubb, Apratim Mitra, Laura B Chopp, Jia Nie, Yi Ding, Arundhoti Das, Harini Venkataganesh, Jan Lee, Dalal El-Khoury and 4 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Inhibition of LDHA promotes GSDME-dependent pyroptosis by activating RIG-I-like receptor signaling.Apoptosis : an international journal on programmed cell death · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Role of lysine-specific demethylase 1 in immunotherapy of gastric cancer: An update.Chinese journal of cancer research = Chung-kuo yen cheng yen chiu · 2024
    Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Daniel B Stamos *Section on Hematopoiesis and Lymphocyte Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD.ORCID 0000-0002-9646-0831
Lauren M Clubb *Section on Hematopoiesis and Lymphocyte Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD.ORCID 0000-0003-1480-7043
Apratim MitraBioinformatics and Scientific Programing Core, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD.ORCID 0000-0003-3279-0054
Laura B ChoppLaboratory of Immune Cell Biology, Center for Cancer Research, National Cancer Institute, Bethesda, MD.ORCID 0000-0001-6494-4439
Jia NieLaboratory of Immune Cell Biology, Center for Cancer Research, National Cancer Institute, Bethesda, MD.ORCID 0000-0002-3865-0143
Yi DingLaboratory of Genome Integrity, Center for Cancer Research, National Cancer Institute, Bethesda, MD.ORCID 0000-0002-1958-8524
Arundhoti DasLaboratory of Genome Integrity, Center for Cancer Research, National Cancer Institute, Bethesda, MD.ORCID 0000-0001-8574-9368
Harini VenkataganeshSection on Hematopoiesis and Lymphocyte Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD.ORCID 0000-0001-6831-6368
Jan LeeSection on Hematopoiesis and Lymphocyte Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD.ORCID 0000-0002-7393-2533
Dalal El-KhourySection on Hematopoiesis and Lymphocyte Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD.ORCID 0000-0002-0239-6462
LiQi LiSection on Hematopoiesis and Lymphocyte Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD.ORCID 0000-0002-3173-2330
Avinash BhandoolaLaboratory of Genome Integrity, Center for Cancer Research, National Cancer Institute, Bethesda, MD.ORCID 0000-0002-4657-8372
Remy BosselutLaboratory of Immune Cell Biology, Center for Cancer Research, National Cancer Institute, Bethesda, MD.ORCID 0000-0003-2033-1790
Paul E LoveSection on Hematopoiesis and Lymphocyte Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD.ORCID 0000-0002-6682-7372
National Institutes of Health · USNational Cancer Institute · US

Funding

Genes and signals controlling mammalian hematopoiesis.ZIAHD001803 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI LOVE, PAUL E · 2009 to 2025
$36.9M
Intramural NIH HHS ZIA HD001803NICHD NIH HHS 1ZIAHD001803
6 · The paper itself

Abstract

Analysis of the transcriptional profiles of developing thymocytes has shown that T lineage commitment is associated with loss of stem cell and early progenitor gene signatures and the acquisition of T cell gene signatures. Less well understood are the epigenetic alterations that accompany or enable these transcriptional changes. Here, we show that the histone demethylase Lsd1 (Kdm1a) performs a key role in extinguishing stem/progenitor transcriptional programs in addition to key repressive gene programs during thymocyte maturation. Deletion of Lsd1 caused a block in late T cell development and resulted in overexpression of interferon response genes as well as genes regulated by the Gfi1, Bcl6, and, most prominently, Bcl11b transcriptional repressors in CD4+CD8+ thymocytes. Transcriptional overexpression in Lsd1-deficient thymocytes was not always associated with increased H3K4 trimethylation at gene promoters, indicating that Lsd1 indirectly affects the expression of many genes. Together, these results identify a critical function for Lsd1 in the epigenetic regulation of multiple repressive gene signatures during T cell development.

Indexed as

Epigenesis, GeneticAnimalsCell LineageDNA-Binding ProteinsGene Expression RegulationHistone DemethylasesHistonesMiceMice, Mutant StrainsMice, TransgenicPromoter Regions, GeneticProto-Oncogene Proteins c-bcl-6Repressor ProteinsThymocytesT-LymphocytesTranscription FactorsBcl11b protein, mouseBcl6 protein, mouseDNA-Binding ProteinsGfi1 protein, mouseHistone Demethylaseshistone H3 trimethyl Lys4HistonesKDM1a protein, mouseProto-Oncogene Proteins c-bcl-6Repressor ProteinsTranscription FactorsTumor Suppressor Proteins

Identifiers

PMID34726730
PMCPMC8570297
OpenAlexW3210997341

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.