Evidence map›Paper›PMID 34726281›Full record

ArticleThe EMBO journal2021

TOC1 clock protein phosphorylation controls complex formation with NF-YB/C to repress hypocotyl growth.

Jiapei Yan, Shibai Li, Yeon Jeong Kim, Qingning Zeng, Amandine Radziejwoski, Lei Wang, Yuko Nomura, Hirofumi Nakagami, David E Somers

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

  1. Circadian rhythms in health and disease.Molecular biomedicine · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2025
    Article
  7. Review
  8. Article
  9. HOS15-mediated turnover of PRR7 enhances freezing tolerance.bioRxiv : the preprint server for biology · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 5 countries.

Jiapei YanMolecular Genetics, Ohio State University, Columbus, OH, USA.ORCID 0000-0003-2573-2702
Shibai LiMolecular Genetics, Ohio State University, Columbus, OH, USA.ORCID 0000-0001-9293-6006
Yeon Jeong KimMolecular Genetics, Ohio State University, Columbus, OH, USA.
Qingning ZengMolecular Genetics, Ohio State University, Columbus, OH, USA.
Amandine RadziejwoskiPOSTECH, Division of Integrative Biosciences and Biotechnology, Pohang, South Korea.
Lei WangMolecular Genetics, Ohio State University, Columbus, OH, USA.ORCID 0000-0002-4912-5387
Yuko NomuraRIKEN Center for Sustainable Resource Science (CSRS), Plant Proteomics Research Unit, Yokohama, Japan.
Hirofumi NakagamiRIKEN Center for Sustainable Resource Science (CSRS), Plant Proteomics Research Unit, Yokohama, Japan.ORCID 0000-0003-2569-7062
David E SomersMolecular Genetics, Ohio State University, Columbus, OH, USA.ORCID 0000-0001-5170-2430
The Ohio State University · USPohang University of Science and Technology · KRRIKEN Center for Sustainable Resource Science · JPChinese Academy of Sciences · CNMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Post-translational control mechanisms of the circadian clockR01GM093285 · NIGMS · OHIO STATE UNIVERSITY · PI SOMERS, DAVID E · 2010 to 2018
$2.7M
Inter- and intracellular mechanisms of circadian regulationR35GM136400 · NIGMS · OHIO STATE UNIVERSITY · PI SOMERS, DAVID E · 2020 to 2024
$1.9M
NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM093285NIGMS NIH HHS R35 GM136400
6 · The paper itself

Abstract

Plant photoperiodic growth is coordinated by interactions between circadian clock and light signaling networks. How post-translational modifications of clock proteins affect these interactions to mediate rhythmic growth remains unclear. Here, we identify five phosphorylation sites in the Arabidopsis core clock protein TIMING OF CAB EXPRESSION 1 (TOC1) which when mutated to alanine eliminate detectable phosphorylation. The TOC1 phospho-mutant fails to fully rescue the clock, growth, and flowering phenotypes of the toc1 mutant. Further, the TOC1 phospho-mutant shows advanced phase, a faster degradation rate, reduced interactions with PHYTOCHROME-INTERACTING FACTOR 3 (PIF3) and HISTONE DEACETYLASE 15 (HDA15), and poor binding at pre-dawn hypocotyl growth-related genes (PHGs), leading to a net de-repression of hypocotyl growth. NUCLEAR FACTOR Y subunits B and C (NF-YB/C) stabilize TOC1 at target promoters, and this novel trimeric complex (NF-TOC1) acts as a transcriptional co-repressor with HDA15 to inhibit PIF-mediated hypocotyl elongation. Collectively, we identify a molecular mechanism suggesting how phosphorylation of TOC1 alters its phase, stability, and physical interactions with co-regulators to precisely phase PHG expression to control photoperiodic hypocotyl growth.

Indexed as

MutationArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCCAAT-Binding FactorGene Expression Regulation, PlantHistone DeacetylasesHypocotylPhosphorylationProteolysisSignal TransductionTranscription FactorsArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCCAAT-Binding FactorHDA15 protein, ArabidopsisHistone DeacetylasesPIF3 protein, ArabidopsisTOC1 protein, ArabidopsisTranscription FactorscircadianNUCLEAR FACTOR YphosphorylationphotomorphogenesisTOC1

Identifiers

PMID34726281
PMCPMC8672182
OpenAlexW3209814675

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.