Evidence map›Paper›PMID 34726173›Full record

ArticleActa crystallographica. Section D, Structural biology2021

Structural basis for SdgB- and SdgA-mediated glycosylation of staphylococcal adhesive proteins.

Dong Gyun Kim, Inwha Baek, Yeon Lee, Hyerry Kim, Jin Young Kim, Geul Bang, Sunghwan Kim, Hye Jin Yoon, Byung Woo Han, Se Won Suh and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Frontiers in microbiology · 2025
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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Dong Gyun KimResearch Institute, National Cancer Center, Goyang, Gyeonggi 10408, Republic of Korea.
Inwha BaekResearch Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, Seoul 08826, Republic of Korea.
Yeon LeeResearch Institute, National Cancer Center, Goyang, Gyeonggi 10408, Republic of Korea.ORCID 0000-0002-3017-4664
Hyerry KimResearch Institute, National Cancer Center, Goyang, Gyeonggi 10408, Republic of Korea.
Jin Young KimKorea Basic Science Institute, Ochang, Chungbuk 28119, Republic of Korea.
Geul BangKorea Basic Science Institute, Ochang, Chungbuk 28119, Republic of Korea.
Sunghwan KimR&D Center, Voronoi Inc., Incheon 21984, Republic of Korea.
Hye Jin YoonDepartment of Chemistry, College of Natural Sciences, Seoul National University, Seoul 08826, Republic of Korea.
Byung Woo HanResearch Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, Seoul 08826, Republic of Korea.ORCID 0000-0001-7571-3791
Se Won SuhDepartment of Chemistry, College of Natural Sciences, Seoul National University, Seoul 08826, Republic of Korea.ORCID 0000-0002-1768-4635
Hyoun Sook KimResearch Institute, National Cancer Center, Goyang, Gyeonggi 10408, Republic of Korea.
Seoul National University · KRKorea Basic Science Institute · KRNational Cancer Center · KRHarvard University · USIncheon National University · KR

Funding

Korea Basic Science Institute C170100National Cancer Center NCC-1910023National Cancer Center NCC-1910032National Cancer Center NCC-2110510National Research Foundation of Korea 2015R1D1A4A01020265National Research Foundation of Korea NRF-2017R1C1B2012225National Research Foundation of Korea NRF-2019R1A2C1090251National Research Foundation of Korea NRF-2020R1C1C1009512
6 · The paper itself

Abstract

The initiation of infection of host tissues by Staphylococcus aureus requires a family of staphylococcal adhesive proteins containing serine-aspartate repeat (SDR) domains, such as ClfA. The O-linked glycosylation of the long-chain SDR domain mediated by SdgB and SdgA is a key virulence factor that protects the adhesive SDR proteins against host proteolytic attack in order to promote successful tissue colonization, and has also been implicated in staphylococcal agglutination, which leads to sepsis and an immunodominant epitope for a strong antibody response. Despite the biological significance of these two glycosyltransferases involved in pathogenicity and avoidance of the host innate immune response, their structures and the molecular basis of their activity have not been investigated. This study reports the crystal structures of SdgB and SdgA from S. aureus as well as multiple structures of SdgB in complex with its substrates (for example UDP, N-acetylglucosamine or SDR peptides), products (glycosylated SDR peptides) or phosphate ions. Together with biophysical and biochemical analyses, this structural work uncovered the novel mechanism by which SdgB and SdgA carry out the glycosyl-transfer process to the long SDR region in SDR proteins. SdgB undergoes dynamic changes in its structure such as a transition from an open to a closed conformation upon ligand binding and takes diverse forms, both as a homodimer and as a heterodimer with SdgA. Overall, these findings not only elucidate the putative role of the three domains of SdgB in recognizing donor and acceptor substrates, but also provide new mechanistic insights into glycosylation of the SDR domain, which can serve as a starting point for the development of antibacterial drugs against staphylococcal infections.

Indexed as

Staphylococcus aureusBacterial ProteinsCrystallography, X-RayGlycosylationGlycosyltransferasesHumansModels, MolecularProtein ConformationStaphylococcal InfectionsSubstrate SpecificityVirulence FactorsBacterial ProteinsGlycosyltransferasesSdgA protein, Staphylococcus aureusSdgB protein, Staphylococcus aureusVirulence Factorscrystal structureglycosyltransferasesSdgASdgBserine–aspartate repeatsstaphylococcal adhesionStaphylococcus aureus

Identifiers

PMID34726173
PMCPMC8561734
OpenAlexW3207279713

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.