Evidence map›Paper›PMID 34726168›Full record

ArticleActa crystallographica. Section D, Structural biology2021

Structure and metal-binding properties of PA4063, a novel player in periplasmic zinc trafficking by Pseudomonas aeruginosa.

Annarita Fiorillo, Andrea Battistoni, Serena Ammendola, Valerio Secli, Serena Rinaldo, Francesca Cutruzzolà, Nicola Demitri, Andrea Ilari

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Cobalt mitigates zinc-starvation effects in Pseudomonas aeruginosa.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2026
    Article
  2. Article
  3. Article
  4. Proteomic profiling of zinc homeostasis mechanisms inbioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. Zinc homeostasis in Pseudomonas.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2023
    Review
  8. Structure and Function of the Zinc Binding Protein ZrgA fromInternational journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Annarita FiorilloDepartment of Biochemical Sciences, Sapienza University of Rome, Pizzale Aldo Moro 5, 00185 Rome, Italy.
Andrea BattistoniDepartment of Biology, University of Tor Vegata, Via delle Ricerca Scientifica 1, Rome, Italy.
Serena AmmendolaDepartment of Biology, University of Tor Vegata, Via delle Ricerca Scientifica 1, Rome, Italy.ORCID 0000-0003-1436-0608
Valerio SecliDepartment of Biology, University of Tor Vegata, Via delle Ricerca Scientifica 1, Rome, Italy.
Serena RinaldoDepartment of Biochemical Sciences, Sapienza University of Rome, Pizzale Aldo Moro 5, 00185 Rome, Italy.
Francesca CutruzzolàDepartment of Biochemical Sciences, Sapienza University of Rome, Pizzale Aldo Moro 5, 00185 Rome, Italy.
Nicola DemitriElettra-Sincrotrone Trieste S.C.p.A., S.S. 14 km 163.5 in Area Science Park, Basovizza, 34149 Trieste, Italy.ORCID 0000-0003-0288-3233
Andrea IlariInstitute of Molecular Biology and Pathology (IBPM), National Research Council of Italy (CNR), Pizzale Aldo Moro 5, Rome, Italy.
University of Rome Tor Vergata · ITInstitute of Molecular Biology and Pathology · ITIstituto Pasteur · ITElettra-Sincrotrone Trieste S.C.p.A. · IT

Funding

Cystic Fibrosis Foundation BATTIS19IOSapienza Università di Roma RM11715C646D693ESapienza Università di Roma RM120172A7AD98EB
6 · The paper itself

Abstract

The capability to obtain essential nutrients in hostile environments is a critical skill for pathogens. Under zinc-deficient conditions, Pseudomonas aeruginosa expresses a pool of metal homeostasis control systems that is complex compared with other Gram-negative bacteria and has only been partially characterized. Here, the structure and zinc-binding properties of the protein PA4063, the first component of the PA4063-PA4066 operon, are described. PA4063 has no homologs in other organisms and is characterized by the presence of two histidine-rich sequences. ITC titration detected two zinc-binding sites with micromolar affinity. Crystallographic characterization, performed both with and without zinc, revealed an α/β-sandwich structure that can be classified as a noncanonical ferredoxin-like fold since it differs in size and topology. The histidine-rich stretches located at the N-terminus and between β3 and β4 are disordered in the apo structure, but a few residues become structured in the presence of zinc, contributing to coordination in one of the two sites. The ability to bind two zinc ions at relatively low affinity, the absence of catalytic cavities and the presence of two histidine-rich loops are properties and structural features which suggest that PA4063 might play a role as a periplasmic zinc chaperone or as a concentration sensor useful for optimizing the response of the pathogen to zinc deficiency.

Indexed as

Pseudomonas aeruginosaZincAmino Acid SequenceBacterial ProteinsBinding SitesCrystallography, X-RayHumansModels, MolecularProtein BindingProtein ConformationPseudomonas InfectionsBacterial ProteinsPA4063 protein, Pseudomonas aeruginosaZincferredoxin-like foldPA4063periplasmic zinc traffickingPseudomonas aeruginosa

Identifiers

PMID34726168
PMCPMC8561739
OpenAlexW3205082914

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.