Evidence map›Paper›PMID 34725712›Full record

ArticleAnalytical and bioanalytical chemistry2021

Truncation of the TPR domain of OGT alters substrate and glycosite selection.

Daniel H Ramirez, Bo Yang, Alexandria K D'Souza, Dacheng Shen, Christina M Woo

Open access · greenAbstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

  1. Mammalian fatty acid synthase andBiochemistry and biophysics reports · 2026
    Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Identification of a Polypeptide Inhibitor ofJournal of the American Chemical Society · 2024
    Article
  9. Dissecting OGT's TPR domain to identify determinants of cellular function.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Targeted Protein O-GlcNAcylation Using Bifunctional Small Molecules.Journal of the American Chemical Society · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Cells · 2022
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Daniel H RamirezDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.
Bo YangDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.
Alexandria K D'SouzaDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.
Dacheng ShenDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.
Christina M WooDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA. cwoo@chemistry.harvard.edu.
Harvard University · USDepartment of Plant Biology · US

Funding

Tools to facilitate manipulation of protein-specific glycosylation stoichiometry in cellsU01CA242098 · NCI · HARVARD UNIVERSITY · PI WOO, CHRISTINA · 2019 to 2021
$1.4M
NCI NIH HHS U01 CA242098NIH HHS U01CA242098
6 · The paper itself

Abstract

O-GlcNAc transferase (OGT) is an essential enzyme that installs O-linked N-acetylglucosamine (O-GlcNAc) to thousands of protein substrates. OGT and its isoforms select from these substrates through the tetratricopeptide repeat (TPR) domain, yet the impact of truncations to the TPR domain on substrate and glycosite selection is unresolved. Here, we report the effects of iterative truncations to the TPR domain of OGT on substrate and glycosite selection with the model protein GFP-JunB and the surrounding O-GlcNAc proteome in U2OS cells. Iterative truncation of the TPR domain of OGT maintains glycosyltransferase activity but alters subcellular localization of OGT in cells. The glycoproteome and glycosites modified by four OGT TPR isoforms were examined on the whole proteome and a single target protein, GFP-JunB. We found the greatest changes in O-GlcNAc on proteins associated with mRNA splicing processes and that the first four TPRs of the canonical nucleocytoplasmic OGT had the broadest substrate scope. Subsequent glycosite analysis revealed that alteration to the last four TPRs corresponded to the greatest shift in the resulting O-GlcNAc consensus sequence. This dataset provides a foundation to analyze how perturbations to the TPR domain and expression of OGT isoforms affect the glycosylation of substrates, which will be critical for future efforts in protein engineering of OGT, the biology of OGT isoforms, and diseases associated with the TPR domain of OGT.

Indexed as

Tetratricopeptide RepeatCatalytic DomainCell Line, TumorGlycoproteinsGlycosylationHumansIsoenzymesN-AcetylglucosaminyltransferasesRNA, MessengerSubstrate SpecificityTranscription FactorsTransfectionGlycoproteinsIsoenzymesJunB protein, humanN-AcetylglucosaminyltransferasesO-GlcNAc transferaseRNA, MessengerTranscription FactorsGlycoproteomicsO-GlcNAcOGTTetratricopeptide repeats (TPRs)

Identifiers

PMID34725712
PMCPMC9647473
OpenAlexW3208940879

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.