Evidence map›Paper›PMID 34725362›Full record

ArticleNature communications2021

Nuclear S-nitrosylation impacts tissue regeneration in zebrafish.

Gianfranco Matrone, Sung Yun Jung, Jong Min Choi, Antrix Jain, Hon-Chiu Eastwood Leung, Kimal Rajapakshe, Cristian Coarfa, Julie Rodor, Martin A Denvir, Andrew H Baker and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. Redefining the role of the thiol-based agentRSC medicinal chemistry · 2026
    Review
  2. Article
  3. Article
  4. eLife · 2026
    Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Role of angiogenic transdifferentiation in vascular recovery.Frontiers in cardiovascular medicine · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Gianfranco MatroneBritish Heart Foundation Centre for Cardiovascular Science, Queen's Medical Research Institute, The University of Edinburgh, 47 Little France Crescent, Edinburgh, EH16 4TJ, UK. gianfranco.matrone@ed.ac.uk.
Sung Yun JungMass Spectrometry Proteomics Core, Baylor College of Medicine, Houston, TX, 77030, USA.ORCID 0000-0003-1521-7977
Jong Min ChoiMass Spectrometry Proteomics Core, Baylor College of Medicine, Houston, TX, 77030, USA.
Antrix JainMass Spectrometry Proteomics Core, Baylor College of Medicine, Houston, TX, 77030, USA.ORCID 0000-0002-2815-3645
Hon-Chiu Eastwood LeungDepartment of Molecular & Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Kimal RajapaksheDepartment of Molecular & Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Cristian CoarfaDepartment of Molecular & Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.ORCID 0000-0002-4183-4939
Julie RodorBritish Heart Foundation Centre for Cardiovascular Science, Queen's Medical Research Institute, The University of Edinburgh, 47 Little France Crescent, Edinburgh, EH16 4TJ, UK.
Martin A DenvirBritish Heart Foundation Centre for Cardiovascular Science, Queen's Medical Research Institute, The University of Edinburgh, 47 Little France Crescent, Edinburgh, EH16 4TJ, UK.
Andrew H BakerBritish Heart Foundation Centre for Cardiovascular Science, Queen's Medical Research Institute, The University of Edinburgh, 47 Little France Crescent, Edinburgh, EH16 4TJ, UK.ORCID 0000-0003-1441-5576
John P CookeCenter for Cardiovascular Regeneration, Department of Cardiovascular Sciences, Houston Methodist Research Institute, Houston, TX, 77030, USA.ORCID 0000-0003-0033-9138
Baylor College of Medicine · USBritish Heart Foundation · GBHouston Methodist · US

Funding

Reversal of Heart Failure: Role of Vascular RecoveryR01HL148338 · NHLBI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI CHEN, KAIFU, COOKE, JOHN P · 2020 to 2023
$2.8M
Role of S-nitrosylation in TransdifferentiationR01HL133254 · NHLBI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI CHEN, KAIFU, COOKE, JOHN P · 2018 to 2021
$1.6M
British Heart Foundation CH/09/002/26360British Heart Foundation CH/11/2/28733British Heart Foundation RE/13/3/30183British Heart Foundation RE/18/5/34216British Heart Foundation RG/14/3/30706British Heart Foundation RG/16/10/32375British Heart Foundation RM/17/3/33381NHLBI NIH HHS R01 HL133254NHLBI NIH HHS R01 HL148338Wellcome TrustWellcome Trust WT103782AIA
6 · The paper itself

Abstract

Despite the importance of nitric oxide signaling in multiple biological processes, its role in tissue regeneration remains largely unexplored. Here, we provide evidence that inducible nitric oxide synthase (iNos) translocates to the nucleus during zebrafish tailfin regeneration and is associated with alterations in the nuclear S-nitrosylated proteome. iNos inhibitors or nitric oxide scavengers reduce protein S-nitrosylation and impair tailfin regeneration. Liquid chromatography/tandem mass spectrometry reveals an increase of up to 11-fold in the number of S-nitrosylated proteins during regeneration. Among these, Kdm1a, a well-known epigenetic modifier, is S-nitrosylated on Cys334. This alters Kdm1a binding to the CoRest complex, thus impairing its H3K4 demethylase activity, which is a response specific to the endothelial compartment. Rescue experiments show S-nitrosylation is essential for tailfin regeneration, and we identify downstream endothelial targets of Kdm1a S-nitrosylation. In this work, we define S-nitrosylation as an essential post-translational modification in tissue regeneration.

Indexed as

RegenerationAnimal FinsAnimalsCell NucleusCo-Repressor ProteinsFemaleHistone DemethylasesMaleNerve Tissue ProteinsNitric OxideSignal TransductionTailZebrafishZebrafish ProteinsCo-Repressor ProteinsHistone DemethylasesKDM1A protein, zebrafishNerve Tissue ProteinsNitric Oxidercor1 protein, zebrafishZebrafish Proteins

Identifiers

PMID34725362
PMCPMC8560954
OpenAlexW3210900760

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.