Evidence map›Paper›PMID 34725358›Full record

ArticleNature communications2021

Inhibition of Clostridium difficile TcdA and TcdB toxins with transition state analogues.

Ashleigh S Paparella, Briana L Aboulache, Rajesh K Harijan, Kathryn S Potts, Peter C Tyler, Vern L Schramm

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

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  12. The Hospital Environment as a Potential Source forInternational journal of environmental research and public health · 2023
    Article
  13. ACS chemical biology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Ashleigh S PaparellaDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, USA.ORCID 0000-0003-1816-1286
Briana L AboulacheDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, USA.ORCID 0000-0003-1762-6299
Rajesh K HarijanDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, USA.
Kathryn S PottsDepartment of Developmental and Molecular Biology and Gottesman Institute of Stem Cell Biology and Regenerative Medicine, Albert Einstein College of Medicine, Bronx, NY, USA.ORCID 0000-0002-3246-9597
Peter C TylerThe Ferrier Research Institute, Victoria University of Wellington, Lower Hutt, New Zealand.ORCID 0000-0002-3151-6208
Vern L SchrammDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, USA. vern.schramm@einsteinmed.org.ORCID 0000-0002-8056-1929
Albert Einstein College of Medicine · USVictoria University of Wellington · NZ

Funding

X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Sean McSweeney · 2019 to 2026
$38.6M
TRANSITION STATE ANALYSIS OF ENZYMATIC REACTIONSR01GM041916 · NIGMS · YESHIVA UNIVERSITY · PI SCHRAMM, VERN L. · 1989 to 2023
$10.0M
TRANSITION STATE ANALYSIS OF ENZYMATIC REACTIONSR37GM041916 · NIGMS · YESHIVA UNIVERSITY · PI SCHRAMM, VERN L. · 1998 to 2007
$3.5M
Targeting Clostridioides difficile with microbiome-sparing, resistant-proof anti-toxinsR01AI150971 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI SCHRAMM, VERN L. · 2021 to 2025
$3.3M
An integrated X-ray data collection systemS10OD020068 · OD · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI ALMO, STEVEN C. · 2015 to 2015
$600k
NIAID NIH HHS R01 AI150971NIGMS NIH HHS P30 GM133893NIGMS NIH HHS R01 GM041916NIGMS NIH HHS R37 GM041916NIH HHS S10 OD020068
6 · The paper itself

Abstract

Clostridium difficile causes life-threatening diarrhea and is the leading cause of healthcare-associated bacterial infections in the United States. TcdA and TcdB bacterial toxins are primary determinants of disease pathogenesis and are attractive therapeutic targets. TcdA and TcdB contain domains that use UDP-glucose to glucosylate and inactivate host Rho GTPases, resulting in cytoskeletal changes causing cell rounding and loss of intestinal integrity. Transition state analysis revealed glucocationic character for the TcdA and TcdB transition states. We identified transition state analogue inhibitors and characterized them by kinetic, thermodynamic and structural analysis. Iminosugars, isofagomine and noeuromycin mimic the transition state and inhibit both TcdA and TcdB by forming ternary complexes with Tcd and UDP, a product of the TcdA- and TcdB-catalyzed reactions. Both iminosugars prevent TcdA- and TcdB-induced cytotoxicity in cultured mammalian cells by preventing glucosylation of Rho GTPases. Iminosugar transition state analogues of the Tcd toxins show potential as therapeutics for C. difficile pathology.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsBacterial ToxinsClostridioides difficileClostridium InfectionsEnterotoxinsHumansKineticsAnti-Bacterial AgentsBacterial ProteinsBacterial ToxinsEnterotoxinstcdA protein, Clostridium difficiletoxB protein, Clostridium difficile

Identifiers

PMID34725358
PMCPMC8560925
OpenAlexW3209029406

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.