Evidence map›Paper›PMID 34724941›Full record

ArticleBMC biology2021

Characterisation of the enzyme transport path between shipworms and their bacterial symbionts.

Giovanna Pesante, Federico Sabbadin, Luisa Elias, Clare Steele-King, J Reuben Shipway, Adam A Dowle, Yi Li, Marta Busse-Wicher, Paul Dupree, Katrin Besser and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 23 citations in OpenAlex.

  1. A transcription factor regulates development of a bacteria-housing eukaryotic cell through DNA damage mitigation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Towards whole life-stage naked clam aquaculture: integrating settlement, growth, and nutrition ofAquaculture international : journal of the European Aquaculture Society · 2026
    Article
  4. Article
  5. Article
  6. Membrane vesicles can contribute to cellulose degradation bybioRxiv : the preprint server for biology · 2024
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Giovanna Pesante *Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK.
Federico Sabbadin *Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK.
Luisa EliasCentre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK.
Clare Steele-KingCentre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK.
J Reuben ShipwayCentre for Enzyme Innovation, School of Biological Sciences, Institute of Biological and Biomedical Sciences, University of Portsmouth, Portsmouth, PO1 2DY, UK.
Adam A DowleBioscience Technology Facility, Department, of Biology, University of York, York, YO10 5DD, UK.
Yi LiCentre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK.
Marta Busse-WicherDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1QW, UK.
Paul DupreeDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1QW, UK.
Katrin BesserCentre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK.
Simon M CraggInstitute of Marine Sciences Laboratories, Langstone Harbour, Ferry Road, Eastney, Portsmouth, PO4 9LY, UK.
Neil C BruceCentre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK. neil.bruce@york.ac.uk.
Simon J McQueen-MasonCentre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK. simon.mcqueenmason@york.ac.uk.ORCID 0000-0002-6781-4768
University of York · GBUniversity of Cambridge · GBUniversity of Portsmouth · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H531543/1Biotechnology and Biological Sciences Research Council BB/L001926/1
6 · The paper itself

Abstract

backgroundShipworms are marine xylophagus bivalve molluscs, which can live on a diet solely of wood due to their ability to produce plant cell wall-degrading enzymes. Bacterial carbohydrate-active enzymes (CAZymes), synthesised by endosymbionts living in specialised shipworm cells called bacteriocytes and located in the animal's gills, play an important role in wood digestion in shipworms. However, the main site of lignocellulose digestion within these wood-boring molluscs, which contains both endogenous lignocellulolytic enzymes and prokaryotic enzymes, is the caecum, and the mechanism by which bacterial enzymes reach the distant caecum lumen has remained so far mysterious. Here, we provide a characterisation of the path through which bacterial CAZymes produced in the gills of the shipworm Lyrodus pedicellatus reach the distant caecum to contribute to the digestion of wood.

resultsThrough a combination of transcriptomics, proteomics, X-ray microtomography, electron microscopy studies and in vitro biochemical characterisation, we show that wood-digesting enzymes produced by symbiotic bacteria are localised not only in the gills, but also in the lumen of the food groove, a stream of mucus secreted by gill cells that carries food particles trapped by filter feeding to the mouth. Bacterial CAZymes are also present in the crystalline style and in the caecum of their shipworm host, suggesting a unique pathway by which enzymes involved in a symbiotic interaction are transported to their site of action. Finally, we characterise in vitro four new bacterial glycosyl hydrolases and a lytic polysaccharide monooxygenase identified in our transcriptomic and proteomic analyses as some of the major bacterial enzymes involved in this unusual biological system.

conclusionBased on our data, we propose that bacteria and their enzymes are transported from the gills along the food groove to the shipworm's mouth and digestive tract, where they aid in wood digestion.

Indexed as

BivalviaProteomicsAnimalsBacteriaPhylogenySymbiosisBacteriaCAZymesCrystalline styleFood grooveLignocelluloseLyrodus pedicellatusShipwormSymbiosisWood-borers

Identifiers

PMID34724941
PMCPMC8561940
OpenAlexW3209948881

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.