Evidence map›Paper›PMID 34723966›Full record

ArticlePLoS genetics2021

A nuclear pore sub-complex restricts the propagation of Ty retrotransposons by limiting their transcription.

Amandine Bonnet, Carole Chaput, Noé Palmic, Benoit Palancade, Pascale Lesage

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.3field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Amandine BonnetUniversité de Paris, Institut de Recherche Saint-Louis, INSERM U944, CNRS UMR 7212, Paris, France.ORCID 0000-0002-3485-8713
Carole ChaputUniversité de Paris, Institut de Recherche Saint-Louis, INSERM U944, CNRS UMR 7212, Paris, France.ORCID 0000-0003-4493-000X
Noé PalmicUniversité de Paris, Institut de Recherche Saint-Louis, INSERM U944, CNRS UMR 7212, Paris, France.ORCID 0000-0001-6545-9005
Benoit PalancadeUniversité de Paris, CNRS, Institut Jacques Monod, Paris, France.ORCID 0000-0002-3894-9735
Pascale LesageUniversité de Paris, Institut de Recherche Saint-Louis, INSERM U944, CNRS UMR 7212, Paris, France.ORCID 0000-0002-4221-8038
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Beyond their canonical function in nucleocytoplasmic exchanges, nuclear pore complexes (NPCs) regulate the expression of protein-coding genes. Here, we have implemented transcriptomic and molecular methods to specifically address the impact of the NPC on retroelements, which are present in multiple copies in genomes. We report a novel function for the Nup84 complex, a core NPC building block, in specifically restricting the transcription of LTR-retrotransposons in yeast. Nup84 complex-dependent repression impacts both Copia and Gypsy Ty LTR-retrotransposons, all over the S. cerevisiae genome. Mechanistically, the Nup84 complex restricts the transcription of Ty1, the most active yeast retrotransposon, through the tethering of the SUMO-deconjugating enzyme Ulp1 to NPCs. Strikingly, the modest accumulation of Ty1 RNAs caused by Nup84 complex loss-of-function is sufficient to trigger an important increase of Ty1 cDNA levels, resulting in massive Ty1 retrotransposition. Altogether, our study expands our understanding of the complex interactions between retrotransposons and the NPC, and highlights the importance for the cells to keep retrotransposons under tight transcriptional control.

Indexed as

RetroelementsTranscription, GeneticGenes, FungalNuclear PoreNuclear Pore Complex ProteinsRNA, FungalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsNuclear Pore Complex ProteinsNUP84 protein, S cerevisiaeRetroelementsRNA, FungalSaccharomyces cerevisiae Proteins

Identifiers

PMID34723966
PMCPMC8585004
OpenAlexW3210149807

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.