Evidence map›Paper›PMID 34723958›Full record

ArticlePLoS computational biology2021

linus: Conveniently explore, share, and present large-scale biological trajectory data in a web browser.

Johannes Waschke, Mario Hlawitschka, Kerim Anlas, Vikas Trivedi, Ingo Roeder, Jan Huisken, Nico Scherf

Abstract read
In one paragraph

Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Johannes WaschkeMax Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.ORCID 0000-0002-2334-3511
Mario HlawitschkaFaculty of Computer Science and Media, Leipzig University of Applied Sciences, Leipzig, Germany.ORCID 0000-0003-2364-0986
Kerim AnlasEMBL Barcelona, Barcelona, Spain.ORCID 0000-0002-9272-8626
Vikas TrivediEMBL Barcelona, Barcelona, Spain.ORCID 0000-0003-0953-0553
Ingo RoederNational Center of Tumor Diseases (NCT), Partner Site Dresden, Dresden, Germany.ORCID 0000-0002-6741-0608
Jan HuiskenMorgridge Institute for Research, Madison, Wisconsin, United States of America.ORCID 0000-0001-7250-3756
Nico ScherfMax Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.ORCID 0000-0003-4003-9121

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In biology, we are often confronted with information-rich, large-scale trajectory data, but exploring and communicating patterns in such data can be a cumbersome task. Ideally, the data should be wrapped with an interactive visualisation in one concise packet that makes it straightforward to create and test hypotheses collaboratively. To address these challenges, we have developed a tool, linus, which makes the process of exploring and sharing 3D trajectories as easy as browsing a website. We provide a python script that reads trajectory data, enriches them with additional features such as edge bundling or custom axes, and generates an interactive web-based visualisation that can be shared online. linus facilitates the collaborative discovery of patterns in complex trajectory data.

Indexed as

InternetComputational BiologyInformation DisseminationProgramming LanguagesUser-Computer Interface

Identifiers

PMID34723958
PMCPMC8584757

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.