Evidence map›Paper›PMID 34721941›Full record

ArticleProceedings. IEEE International Conference on Bioinformatics and Biomedicine2020

A Lexical-based Formal Concept Analysis Method to Identify Missing Concepts in the NCI Thesaurus.

Fengbo Zheng, Licong Cui

Abstract read
In one paragraph

Article in Proceedings. IEEE International Conference on Bioinformatics and Biomedicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. A substring replacement approach for identifying missing IS-A relations in SNOMED CT.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine · 2022
    Article
  3. Leveraging non-lattice subgraphs for suggestion of new concepts for SNOMED CT.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Fengbo ZhengDepartment of Computer Science, University of Kentucky, Lexington, Kentucky, USA.
Licong CuiSchool of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, Texas, USA.

Funding

Biomedical Terminology Quality Assurance for Enhancing Clinical Queries over Electronic Health RecordsR01LM013335 · NLM · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI CUI, LICONG · 2020 to 2021
$663k
NLM NIH HHS R01 LM013335
6 · The paper itself

Abstract

Biomedical terminologies have been increasingly used in modern biomedical research and applications to facilitate data management and ensure semantic interoperability. As part of the evolution process, new concepts are regularly added to biomedical terminologies in response to the evolving domain knowledge and emerging applications. Most existing concept enrichment methods suggest new concepts via directly importing knowledge from external sources. In this paper, we introduced a lexical method based on formal concept analysis (FCA) to identify potentially missing concepts in a given terminology by leveraging its intrinsic knowledge - concept names. We first construct the FCA formal context based on the lexical features of concepts. Then we perform multistage intersection to formalize new concepts and detect potentially missing concepts. We applied our method to the

Indexed as

Biomedical TerminologiesConcept EnrichmentFormal Concept Analysis

Identifiers

PMID34721941
PMCPMC8552537

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.