Evidence map›Paper›PMID 34720095›Full record

ArticleThe Journal of clinical investigation2021

NK cell receptor and ligand composition influences the clearance of SARS-CoV-2.

Wan-Chen Hsieh, En-Yu Lai, Yu-Ting Liu, Yi-Fu Wang, Yi-Shiuan Tzeng, Lu Cui, Yun-Ju Lai, Hsiang-Chi Huang, Jia-Hsin Huang, Hung-Chih Ni and 18 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
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  8. Observational
  9. NK-cell receptor modulation in viral infections.Clinical and experimental immunology · 2024
    Review
  10. 1-L Transcription of SARS-CoV-2 Spike Protein S1 Subunit.International journal of molecular sciences · 2024
    Article
  11. Article
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  15. Article
  16. Article
  17. Innate immune cell activation causes lung fibrosis in a humanized model of long COVID.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 8 institutions in 4 countries.

Wan-Chen HsiehInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
En-Yu LaiInstitute of Statistical Science, and.
Yu-Ting LiuInstitute of Information Science, Academia Sinica, Taipei, Taiwan.
Yi-Fu WangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Yi-Shiuan TzengInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Lu CuiDepartment of Pathology, Institute of Stem Cell Biology and Regenerative Medicine (ISCBRM), Stanford University School of Medicine, Stanford, California, USA.
Yun-Ju LaiInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Hsiang-Chi HuangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Jia-Hsin HuangInstitute of Information Science, Academia Sinica, Taipei, Taiwan.
Hung-Chih NiInstitute of Information Science, Academia Sinica, Taipei, Taiwan.
Dong-Yan TsaiGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Jian-Jong LiangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Chun-Che LiaoInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Ya-Ting LuInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Laurence JiangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Ming-Tsan LiuCenters for Disease Control, Taipei, Taiwan.
Jann-Tay WangDepartment of Internal Medicine, National Taiwan University Hospital, Taipei, Taiwan.
Sui-Yuan ChangDepartment of Clinical Laboratory Sciences and Medical Biotechnology, National Taiwan University College of Medicine, Taipei, Taiwan.
Chung-Yu ChenGraduate Institute of Toxicology, College of Medicine, National Taiwan University, Taipei, Taiwan.
Hsing-Chen TsaiDepartment of Internal Medicine, National Taiwan University Hospital, Taipei, Taiwan.
Yao-Ming ChangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Gerlinde WernigDepartment of Pathology, Institute of Stem Cell Biology and Regenerative Medicine (ISCBRM), Stanford University School of Medicine, Stanford, California, USA.
Chia-Wei LiInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Kuo-I LinGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Yi-Ling LinInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Huai-Kuang TsaiInstitute of Information Science, Academia Sinica, Taipei, Taiwan.
Yen-Tsung HuangGenome and Systems Biology Degree Program, National Taiwan University, Taipei, Taiwan.
Shih-Yu ChenInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Institute of Biomedical Sciences, Academia Sinica · TWNational Taiwan University · TWCalifornia Institute for Regenerative Medicine · USGenomics Research Center, Academia Sinica · TWInstitute of Information Science, Academia Sinica · TWNational Institute for Basic Biology · JPNational Taiwan University Hospital · TWUniversity of Massachusetts Lowell · US

Funding

Immune Checkpoint Inhibitors as Antifibrotic Therapy for Idiopathic Pulmonary FibrosisK08HL143143 · NHLBI · STANFORD UNIVERSITY · PI WERNIG, GERLINDE · 2018 to 2020
$502k
NHLBI NIH HHS K08 HL143143
6 · The paper itself

Abstract

To explore how the immune system controls clearance of SARS-CoV-2, we used a single-cell, mass cytometry-based proteomics platform to profile the immune systems of 21 patients who had recovered from SARS-CoV-2 infection without need for admission to an intensive care unit or for mechanical ventilation. We focused on receptors involved in interactions between immune cells and virus-infected cells. We found that the diversity of receptor repertoires on natural killer (NK) cells was negatively correlated with the viral clearance rate. In addition, NK subsets expressing the receptor DNAM1 were increased in patients who more rapidly recovered from infection. Ex vivo functional studies revealed that NK subpopulations with high DNAM1 expression had cytolytic activities in response to target cell stimulation. We also found that SARS-CoV-2 infection induced the expression of CD155 and nectin-4, ligands of DNAM1 and its paired coinhibitory receptor TIGIT, which counterbalanced the cytolytic activities of NK cells. Collectively, our results link the cytolytic immune responses of NK cells to the clearance of SARS-CoV-2 and show that the DNAM1 pathway modulates host-pathogen interactions during SARS-CoV-2 infection.

Indexed as

AdolescentAdultAgedAnimalsAntigens, Differentiation, T-LymphocyteCell Adhesion MoleculesCohort StudiesCOVID-19Cytotoxicity, ImmunologicFemaleHeterograftsHost Microbial InteractionsHumansImmunophenotypingIn Vitro TechniquesKiller Cells, NaturalAntigens, Differentiation, T-LymphocyteCell Adhesion MoleculesLigandsNECTIN4 protein, humanNectinsNK Cell Lectin-Like Receptor Subfamily Dpoliovirus receptorReceptors, ImmunologicReceptors, Natural Killer CellReceptors, VirusTIGIT protein, humanT Lineage-Specific Activation Antigen 1COVID-19NK cells

Identifiers

PMID34720095
PMCPMC8553551
OpenAlexW3208140860

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.