Evidence map›Paper›PMID 34719824›Full record

ArticleProtein science : a publication of the Protein Society2022

Structural basis for the interaction of SARS-CoV-2 virulence factor nsp1 with DNA polymerase α-primase.

Mairi L Kilkenny, Charlotte E Veale, Amir Guppy, Steven W Hardwick, Dimitri Y Chirgadze, Neil J Rzechorzek, Joseph D Maman, Luca Pellegrini

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.0field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. SARS-CoV2 Nsp1 is a metal-dependent DNA and RNA endonuclease.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2024
    Article
  9. Review
  10. Nsp1 stalls DNA Polymerase α at DNA hairpins.bioRxiv : the preprint server for biology · 2024
    Article
  11. Article
  12. Inhibition of mRNA nuclear export promotes SARS-CoV-2 pathogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Review
  18. Structures of human primosome elongation complexes.Nature structural & molecular biology · 2023
    Article
  19. Structures of human primosome elongation complexes.Nature structural & molecular biology · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Mairi L KilkennyDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1GA, UK.
Charlotte E VealeDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1GA, UK.
Amir GuppyDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1GA, UK.
Steven W HardwickDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1GA, UK.
Dimitri Y ChirgadzeDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1GA, UK.
Neil J RzechorzekDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1GA, UK.
Joseph D MamanDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1GA, UK.
Luca PellegriniDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1GA, UK.ORCID https://orcid.org/0000-0002-9300-497X
University of Cambridge · GB

Funding

Wellcome Trust 104641/Z/14/Z
6 · The paper itself

Abstract

The molecular mechanisms that drive the infection by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)-the causative agent of coronavirus disease 2019 (COVID-19)-are under intense current scrutiny to understand how the virus operates and to uncover ways in which the disease can be prevented or alleviated. Recent proteomic screens of the interactions between viral and host proteins have identified the human proteins targeted by SARS-CoV-2. The DNA polymerase α (Pol α)-primase complex or primosome-responsible for initiating DNA synthesis during genomic duplication-was identified as a target of nonstructural protein 1 (nsp1), a major virulence factor in the SARS-CoV-2 infection. Here, we validate the published reports of the interaction of nsp1 with the primosome by demonstrating direct binding with purified recombinant components and providing a biochemical characterization of their interaction. Furthermore, we provide a structural basis for the interaction by elucidating the cryo-electron microscopy structure of nsp1 bound to the primosome. Our findings provide biochemical evidence for the reported targeting of Pol α by the virulence factor nsp1 and suggest that SARS-CoV-2 interferes with Pol α's putative role in the immune response during the viral infection.

Indexed as

COVID-19SARS-CoV-2Viral Nonstructural ProteinsCryoelectron MicroscopyDNA Polymerase IDNA PrimaseHumansProteomicsVirulence FactorsDNA polymerase alpha-primaseDNA Polymerase IDNA PrimaseORF1ab polyprotein, SARS-CoV-2Viral Nonstructural ProteinsVirulence Factorscryo-EMDNA polymerase α-primasensp1protein-protein interactionSARS-CoV-2

Identifiers

PMID34719824
PMCPMC8661717
OpenAlexW3208596153

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.