Evidence map›Paper›PMID 34719069›Full record

ArticleProtein science : a publication of the Protein Society2021

The effect of charged residue substitutions on the thermodynamics of protein-surface interactions.

Gabriel Ortega, Miguel A Aguilar, Bishal K Gautam, Kevin W Plaxco

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Gabriel OrtegaDepartment of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California, USA.ORCID 0000-0002-7126-9096
Miguel A AguilarDepartment of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California, USA.ORCID 0000-0002-0517-2106
Bishal K GautamDepartment of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California, USA.ORCID 0000-0001-7261-8406
Kevin W PlaxcoDepartment of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California, USA.ORCID 0000-0003-4772-8771
University of California, Santa Barbara · USIkerbasque · ES

Funding

The thermodynamics of protein-surface interactionsR01GM118560 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI PLAXCO, KEVIN W · 2017 to 2020
$1.4M
Protein-folding-based in-vivo biosensorsR21AI154550 · NIAID · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI PLAXCO, KEVIN W · 2020 to 2021
$414k
NIAID NIH HHS R21 AI154550NIGMS NIH HHS R01 GM118560
6 · The paper itself

Abstract

The interactions of proteins with surfaces are important in both biological processes and biotechnologies. In contrast to decades of study regarding the biophysics of proteins in bulk solution, however, our mechanistic understanding of the biophysics of proteins interacting with surfaces remains largely qualitative. In response, we have set to explore quantitatively the thermodynamics of protein-surface interactions. In this work, we explore systematically the role of electrostatics in modulating the interaction between proteins and charged surfaces. In particular, we use electrochemistry to explore the extent to which a macroscopic, hydroxyl-coated surface held at a slightly negative potential affects the folding thermodynamics of surface-attached protein variants with different composition of charged amino acids. Doing so, we find that attachment to the surface generally leads to a net stabilization, presumably due to excluded volume effects that reduce the entropy of the unfolded state. The magnitude of this stabilization, however, is strongly correlated with the charged-residue content of the protein. In particular, we find statistically significant correlations with both the net charge of the protein, with greater negative charge leading to less stabilization by the surface, and with the number of arginines, with more arginines leading to greater stabilization. Such findings refine our understanding of protein-surface interactions, providing in turn a guiding rationale to achieve the functional deposition of proteins on artificial surfaces for implementation in, for example, protein-based biotechnologies.

Indexed as

Protein FoldingAmino Acid MotifsAmino AcidsElectrochemical TechniquesKineticsProtein BindingProtein DenaturationProteinsStatic ElectricitySurface PropertiesThermodynamicsAmino AcidsProteinsbiophysicsbiosensorselectrochemistryelectrostaticsmonolayersproteins

Identifiers

PMID34719069
PMCPMC8605371
OpenAlexW3208438050

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.