Evidence map›Paper›PMID 34718924›Full record

ArticleVeterinary research communications2022

Effect of selected single nucleotide polymorphisms in SLC11A1, ANKRA2, IFNG and PGLYRP1 genes on host susceptibility to Mycobacterium avium subspecies paratuberculosis infection in Indian cattle.

B Gopi, Ran Vir Singh, Satish Kumar, Sushil Kumar, Anuj Chauhan, Arvind Sonwane, Amit Kumar, Jaya Bharati, Shoor Vir Singh

Abstract read
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In one paragraph

Article in Veterinary research communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Association ofPathogens (Basel, Switzerland) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

B GopiDivision of Animal Genetics, ICAR- Indian Veterinary Research Institute, Izatnagar, 243122, Bareilly, UP, India.
Ran Vir SinghDivision of Animal Genetics, ICAR- Indian Veterinary Research Institute, Izatnagar, 243122, Bareilly, UP, India. rvsingh.icar@gmail.com.
Satish KumarDivision of Animal Genetics, ICAR- Indian Veterinary Research Institute, Izatnagar, 243122, Bareilly, UP, India. hilsa.satis2007@gmail.com.ORCID http://orcid.org/0000-0002-4706-0241
Sushil KumarDivision of Animal Genetics, ICAR- Indian Veterinary Research Institute, Izatnagar, 243122, Bareilly, UP, India.
Anuj ChauhanDivision of Animal Genetics, ICAR- Indian Veterinary Research Institute, Izatnagar, 243122, Bareilly, UP, India.
Arvind SonwaneDivision of Animal Genetics, ICAR- Indian Veterinary Research Institute, Izatnagar, 243122, Bareilly, UP, India.
Amit KumarDivision of Animal Genetics, ICAR- Indian Veterinary Research Institute, Izatnagar, 243122, Bareilly, UP, India.
Jaya BharatiAnimal Physiology, ICAR- National Research Centre on Pig, Rani, 781131, Guwahati, Assam, India.ORCID http://orcid.org/0000-0003-2194-6535
Shoor Vir SinghDepartment of Biotechnology, GLA University, Mathura, UP, India.ORCID http://orcid.org/0000-0001-9619-7597
Indian Veterinary Research Institute · INGLA University · INICAR-National Research Centre on Pig · IN

Funding

ICAR-Indian Veterinary Research Institute IXX09774
6 · The paper itself

Abstract

Paratuberculosis (PTB) is a chronic infectious enteritis of ruminants, caused by Mycobacterium avium subspecies paratuberculosis (MAP) that brings huge economic loss to the dairy farmers. The study was conducted to explore the association of selected SNPs in IFNG, SLC11A1, ANKRA2 and PGLYRP1 genes with resistance to PTB disease in Indian cattle population. A case-control resource population was established based on the results of diagnostic tests used for detection of MAP infection status viz. ELISA, Johnin PPD test, faecal microscopy and IS900 blood PCR. The PCR-RFLP method was used for genotyping of SNPs. SNPs rs109453173 in SLC11A1, rs110853455 in IFNG and rs41933863 in ANKRA2 genes were significantly (P<0.05) associated with resistance to MAP infection. For SNP rs109453173, GG genotype and G allele was found to be associated with resistance against MAP infection than CC and CG genotypes and C allele, respectively. For SNP rs110853455, AG genotype was found to be associated with susceptibility to MAP infection than AA and GG genotype. For SNP rs41933863, the AG genotype provided three and six times more resistance against MAP infection than GG and AA genotype. The results of this study are suggestive of SNPs rs109453173, rs110853455 and rs41933863 as potential markers for screening MAP resistant cattle and a breeding programme favouring GG genotype and G allele for rs109453173, AG genotype for rs41933863 and against AG genotype for rs110853455 might confer resistance against MAP infection in Indian cattle. However, investigation of these SNPs in an independent and larger population will warrant the strength of association for resistance against MAP infection in cattle.

Indexed as

Cattle DiseasesMycobacterium avium subsp. paratuberculosisParatuberculosisAnimalsCattleGenotypePolymorphism, Single NucleotideANKRA2GenotypeImmune responseParatuberculosisResistanceSLC11A1

Identifiers

PMID34718924
OpenAlexW3209574458

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.