Evidence map›Paper›PMID 34717533›Full record

ArticleBMC genomics2021

Identification of defense related gene families and their response against powdery and downy mildew infections in Vitis vinifera.

Neetu Goyal, Garima Bhatia, Naina Garewal, Anuradha Upadhyay, Kashmir Singh

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
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  13. Dissecting the Meiotic Recombination Patterns in aInternational journal of molecular sciences · 2023
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  14. The Ups and Downs of PlantFrontiers in plant science · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Neetu GoyalDepartment of Biotechnology, Panjab University, BMS Block I, Sector 25, Chandigarh, -160014, India.
Garima BhatiaDepartment of Biotechnology, Panjab University, BMS Block I, Sector 25, Chandigarh, -160014, India.
Naina GarewalDepartment of Biotechnology, Panjab University, BMS Block I, Sector 25, Chandigarh, -160014, India.
Anuradha UpadhyayNational Research Centre for Grapes, Solapur Road, Pune, Maharashtra, 412 307, India.
Kashmir SinghDepartment of Biotechnology, Panjab University, BMS Block I, Sector 25, Chandigarh, -160014, India. kashmirbio@pu.ac.in.ORCID http://orcid.org/0000-0002-9646-9043
Panjab University · INNational Research Centre for Grapes · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGrapevine (Vitis vinifera) productivity has been severely affected by various bacterial, viral and fungal diseases worldwide. When a plant is infected with the pathogen, various defense mechanisms are subsequently activated in plants at various molecular levels. Thus, for substantiating the disease control in an eco-friendly way, it is essential to understand the molecular mechanisms governing pathogen resistance in grapes.

resultsIn our study, we performed genome-wide identification of various defensive genes expressed during powdery mildew (PM) and downy mildew (DM) infections in grapevine. Consequently, we identified 6, 21, 2, 5, 3 and 48 genes of Enhanced Disease Susceptibility 1 (EDS1), Non-Race-specific Disease Resistance (NDR1), Phytoalexin deficient 4 (PAD4), Nonexpressor of PR Gene (NPR), Required for Mla-specified resistance (RAR) and Pathogenesis Related (PR), respectively, in the grapevine genome. The phylogenetic study revealed that V. vinifera defensive genes are evolutionarily related to Arabidopsis thaliana. Differential expression analysis resulted in identification of 2, 4, 7, 2, 4, 1 and 7 differentially expressed Nucleotide-binding leucine rich repeat receptor (NLR), EDS1, NDR1, PAD4, NPR, RAR1 and PR respectively against PM infections and 28, 2, 5, 4, 1 and 19 differentially expressed NLR, EDS1, NDR1, NPR, RAR1 and PR respectively against DM infections in V. vinifera. The co-expression study showed the occurrence of closely correlated defensive genes that were expressed during PM and DM stress conditions.

conclusionThe PM and DM responsive defensive genes found in this study can be characterized in future for impelling studies relaying fungal and oomycete resistance in plants, and the functionally validated genes would then be available for conducting in-planta transgenic gene expression studies for grapes.

Indexed as

OomycetesVitisGene Expression Regulation, PlantHumansPhylogenyPlant DiseasesPlant ProteinsPowdersPlant ProteinsPowdersBiotic stressDefense related genesGrapevineHost-pathogen interactionsMildew resistance

Identifiers

PMID34717533
PMCPMC8556916
OpenAlexW3209522170

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.