Evidence map›Paper›PMID 34716344›Full record

ArticleNature communications2021

Structural basis for high selectivity of a rice silicon channel Lsi1.

Yasunori Saitoh, Namiki Mitani-Ueno, Keisuke Saito, Kengo Matsuki, Sheng Huang, Lingli Yang, Naoki Yamaji, Hiroshi Ishikita, Jian-Ren Shen, Jian Feng Ma and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
10.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
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  10. Analysis ofPlants (Basel, Switzerland) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Yasunori Saitoh *Research Institute for Interdisciplinary Science, Okayama University, Tsushima Naka 3-1-1, Kita, Okayama, 700-8530, Japan.ORCID 0000-0002-7720-7902
Namiki Mitani-Ueno *Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, 710-0046, Japan.
Keisuke Saito *Research Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-Ku, Tokyo, 153-8904, Japan.ORCID 0000-0002-2293-9743
Kengo MatsukiGraduate School of Natural Science and Technology, Okayama University, 3-1-1 Tsushima Naka, Okayama, 700-8530, Japan.ORCID 0000-0001-7713-2675
Sheng HuangInstitute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, 710-0046, Japan.
Lingli YangResearch Institute for Interdisciplinary Science, Okayama University, Tsushima Naka 3-1-1, Kita, Okayama, 700-8530, Japan.ORCID 0000-0001-9736-0480
Naoki YamajiInstitute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, 710-0046, Japan.
Hiroshi IshikitaResearch Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-Ku, Tokyo, 153-8904, Japan.ORCID 0000-0002-5849-8150
Jian-Ren ShenResearch Institute for Interdisciplinary Science, Okayama University, Tsushima Naka 3-1-1, Kita, Okayama, 700-8530, Japan.ORCID 0000-0003-4471-8797
Jian Feng MaInstitute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, 710-0046, Japan. maj@rib.okayama-u.ac.jp.ORCID 0000-0003-3411-827X
Michihiro SugaResearch Institute for Interdisciplinary Science, Okayama University, Tsushima Naka 3-1-1, Kita, Okayama, 700-8530, Japan. michisuga@okayama-u.ac.jp.ORCID 0000-0001-8542-5910
Okayama University · JPOkayama University of Science · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Silicon (Si), the most abundant mineral element in the earth's crust, is taken up by plant roots in the form of silicic acid through Low silicon rice 1 (Lsi1). Lsi1 belongs to the Nodulin 26-like intrinsic protein subfamily in aquaporin and shows high selectivity for silicic acid. To uncover the structural basis for this high selectivity, here we show the crystal structure of the rice Lsi1 at a resolution of 1.8 Å. The structure reveals transmembrane helical orientations different from other aquaporins, characterized by a unique, widely opened, and hydrophilic selectivity filter (SF) composed of five residues. Our structural, functional, and theoretical investigations provide a solid structural basis for the Si uptake mechanism in plants, which will contribute to secure and sustainable rice production by manipulating Lsi1 selectivity for different metalloids.

Indexed as

AnimalsAquaporinsBiological TransportCrystallography, X-RayFemaleModels, MolecularMolecular Dynamics SimulationMutationOocytesOryzaPlant ProteinsProtein ConformationSilicic AcidSiliconWaterXenopus laevisAquaporinsPlant ProteinsSilicic AcidSiliconWater

Identifiers

PMID34716344
PMCPMC8556265
OpenAlexW3208626065

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.